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IMGVR_UViG_3300020269_000026-3300020269-Ga0211484_100006011
Arc-VirIMGVR_UViG_3300020269_000026-3300020269-Ga0211484_100006011
Identity
- Kingdom:
- archaea
Quality
78.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-36
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ckaA01 | 3.40.5.120 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.86 | 76.0 | 6.69e-01 | 100.0% | 73.5% |
| 6hmjA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.67 | 48.0 | 3.45e-01 | 76.5% | 49.5% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.65 | 54.0 | 4.88e-01 | 100.0% | 78.0% |
| 4i62A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.65 | 53.0 | 4.03e-01 | 100.0% | 91.4% |
| 3bxwA03 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.64 | 49.0 | 4.45e-01 | 97.1% | 96.4% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.64 | 50.0 | 4.25e-01 | 100.0% | 59.1% |
| 1txoB00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.63 | 50.0 | 3.12e-01 | 100.0% | 25.4% |
| 1u7kA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.63 | 48.0 | 3.30e-01 | 85.3% | 72.5% |
| 3nkqA03 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.62 | 47.0 | 2.70e-01 | 88.2% | 11.5% |
| 4tpuA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.62 | 55.0 | 5.36e-01 | 100.0% | 91.9% |
| 2xgvA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.62 | 47.0 | 3.22e-01 | 88.2% | 69.2% |
| 2j9uB00 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.62 | 50.0 | 4.65e-01 | 100.0% | 95.7% |
| 2y8yA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.61 | 47.0 | 3.54e-01 | 100.0% | 93.9% |
| 4x9xA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 43.0 | 2.94e-01 | 82.4% | 84.6% |
| 1upsA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.60 | 47.0 | 3.35e-01 | 100.0% | 94.7% |
| 2xguB00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.60 | 45.0 | 3.12e-01 | 88.2% | 70.9% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.60 | 46.0 | 3.56e-01 | 97.1% | 95.7% |
| 2qqrA02 | 3.10.330.70 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.59 | 47.0 | 4.27e-01 | 100.0% | 96.2% |
| 3nuhB02 | 3.30.300.370 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.59 | 45.0 | 3.30e-01 | 100.0% | 91.7% |
| 1ktbA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.59 | 52.0 | 3.77e-01 | 100.0% | 39.6% |
| 4s1hA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.59 | 45.0 | 2.65e-01 | 85.3% | 85.7% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.58 | 43.0 | 3.73e-01 | 97.1% | 95.7% |
| 2q1mA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 45.0 | 3.27e-01 | 100.0% | 56.9% |
| 5i0fB04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.57 | 41.0 | 3.35e-01 | 91.2% | 47.6% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.57 | 39.0 | 3.85e-01 | 100.0% | 82.0% |
| 4ba0A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.57 | 50.0 | 4.39e-01 | 100.0% | 66.7% |
| 2lvhA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.55 | 44.0 | 4.18e-01 | 100.0% | 75.6% |
| 3c0fB00 | 3.30.1490.340 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.55 | 42.0 | 3.24e-01 | 88.2% | 80.0% |
| 3zq5A03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.55 | 37.0 | 2.68e-01 | 91.2% | 25.5% |
| 3dadA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.54 | 45.0 | 2.63e-01 | 100.0% | 23.8% |
| 2lg7A00 | 2.60.60.50 | Mainly Beta › Sandwich › Lipoxygenase-1 › | 0.54 | 38.0 | 2.75e-01 | 100.0% | 22.5% |
| 3gv4A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 46.0 | 3.33e-01 | 100.0% | 36.4% |
| 4j27A02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 43.0 | 3.32e-01 | 100.0% | 46.1% |
| 3vhtB02 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.53 | 37.0 | 3.73e-01 | 97.1% | 85.3% |
| 1sqgA03 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.53 | 36.0 | 3.26e-01 | 73.5% | 50.0% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.52 | 38.0 | 3.50e-01 | 97.1% | 96.5% |
| 1l1lA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.52 | 42.0 | 2.38e-01 | 100.0% | 52.6% |
| 2hvfA00 | 3.40.5.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain | 0.50 | 39.0 | 3.61e-01 | 100.0% | 73.1% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3245668 | 822.2.1.0 ↗ | a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like | 0.84 | 73.0 | 5.40e-01 | 100.0% | 40.0% |
| 3475783 | 822.2.1.1 ↗ | a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK | 0.83 | 70.0 | 6.95e-01 | 97.1% | 100.0% |
| 3499017 | 822.2.1.0 ↗ | a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like | 0.83 | 68.0 | 5.37e-01 | 94.1% | 48.6% |
| 4979507 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.77 | 61.0 | 4.10e-01 | 100.0% | 30.2% |
| 4528478 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.77 | 64.0 | 5.61e-01 | 100.0% | 96.4% |
| 3277720 | 375.1.1.185 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 | 0.75 | 65.0 | 6.24e-01 | 100.0% | 90.0% |
| 3397134 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.72 | 57.0 | 5.14e-01 | 100.0% | 62.0% |
| 4990489 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 63.0 | 5.57e-01 | 100.0% | 86.0% |
| 5032187 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 59.0 | 5.19e-01 | 100.0% | 89.1% |
| 4026823 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 60.0 | 5.53e-01 | 97.1% | 88.6% |
| 3719787 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 58.0 | 5.56e-01 | 97.1% | 95.0% |
| 4965365 | 375.1.1.336 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7129 | 0.70 | 56.0 | 5.87e-01 | 97.1% | 100.0% |
| 3369564 | 130.1.1.39 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › DUF7086 | 0.70 | 61.0 | 3.99e-01 | 100.0% | 45.7% |
| 4099915 | 375.1.1.128 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT | 0.69 | 57.0 | 5.69e-01 | 97.1% | 97.1% |
| 5068907 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 59.0 | 5.40e-01 | 97.1% | 84.4% |
| 2393285 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 55.0 | 4.17e-01 | 97.1% | 46.2% |
| 5025086 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.68 | 55.0 | 4.88e-01 | 100.0% | 89.1% |
| 4583179 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 54.0 | 4.78e-01 | 97.1% | 96.4% |
| 3737497 | 7516.1.1.6 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_8 | 0.67 | 51.0 | 3.03e-01 | 91.2% | 50.7% |
| 4993851 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 56.0 | 5.18e-01 | 100.0% | 84.4% |
| 4028011 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 53.0 | 5.00e-01 | 100.0% | 88.9% |
| 4960524 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 56.0 | 5.19e-01 | 100.0% | 84.4% |
| 3320721 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 54.0 | 4.84e-01 | 97.1% | 90.0% |
| 4953501 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 56.0 | 5.35e-01 | 100.0% | 87.5% |
| 4028716 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.65 | 55.0 | 3.69e-01 | 100.0% | 57.0% |
| 4885815 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.65 | 51.0 | 4.55e-01 | 97.1% | 100.0% |
| 4950662 | 1056.1.1.1 ↗ | a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD | 0.65 | 54.0 | 3.30e-01 | 100.0% | 15.7% |
| 4961283 | 101.1.2.935 ↗ | alpha arrays › HTH › HTH › winged helix domain › HVO_B0008_C | 0.64 | 50.0 | 3.74e-01 | 100.0% | 33.0% |
| 3388528 | 7056.1.1.0 ↗ | few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan | 0.64 | 52.0 | 5.05e-01 | 100.0% | 87.5% |
| 3349141 | 375.1.1.182 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7086 | 0.63 | 46.0 | 3.08e-01 | 88.2% | 19.3% |
| 5015962 | 375.1.1.64 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX | 0.61 | 53.0 | 4.70e-01 | 100.0% | 70.0% |
| 4985088 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.61 | 50.0 | 3.50e-01 | 100.0% | 33.3% |
| 4470809 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 50.0 | 4.29e-01 | 100.0% | 98.3% |
| 3622513 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.61 | 47.0 | 4.16e-01 | 100.0% | 90.0% |
| 4519945 | 101.1.14.4 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › PF31232 | 0.61 | 49.0 | 4.33e-01 | 97.1% | 94.4% |
| 4029135 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.60 | 46.0 | 3.26e-01 | 100.0% | 25.0% |
| 3634340 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.60 | 41.0 | 3.42e-01 | 88.2% | 38.8% |
| 3719535 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 42.0 | 2.45e-01 | 97.1% | 7.0% |
| 2389398 | 386.1.1.37 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zn-C2H2_12 | 0.58 | 41.0 | 4.11e-01 | 91.2% | 74.3% |
| 3970701 | 560.1.1.0 ↗ | few secondary structure elements › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain | 0.58 | 49.0 | 4.72e-01 | 100.0% | 97.5% |
| 3716212 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.57 | 42.0 | 3.40e-01 | 100.0% | 37.6% |
| 3311191 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.57 | 41.0 | 3.82e-01 | 100.0% | 58.2% |
| 3185796 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.56 | 39.0 | 3.93e-01 | 100.0% | 91.4% |
| 3612662 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.56 | 40.0 | 2.93e-01 | 100.0% | 24.6% |
| 3923587 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 47.0 | 4.38e-01 | 100.0% | 95.6% |
| 4406921 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 41.0 | 3.25e-01 | 91.2% | 57.6% |
| 4433999 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 46.0 | 4.64e-01 | 100.0% | 97.1% |
| 3579412 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 38.0 | 3.24e-01 | 91.2% | 36.9% |
| 3265848 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.54 | 46.0 | 3.25e-01 | 100.0% | 32.7% |
| 3245932 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 45.0 | 4.19e-01 | 100.0% | 82.2% |
| 3598956 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.53 | 47.0 | 3.55e-01 | 100.0% | 45.0% |
| 4945555 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 37.0 | 3.72e-01 | 100.0% | 85.7% |
| 5057952 | 375.1.1.325 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › OapC | 0.52 | 37.0 | 3.35e-01 | 94.1% | 84.6% |
| 3809581 | 325.1.6.4 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PS_Dcarbxylase | 0.50 | 38.0 | 2.29e-01 | 94.1% | 96.7% |