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IMGVR_UViG_3300020312_000067-3300020312-Ga0211542_10009093

Arc-Vir

IMGVR_UViG_3300020312_000067-3300020312-Ga0211542_10009093

Quality

88.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-42_151-201
PDB
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wn0A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.78 47.0 4.15e-01 72.5% 42.7%
2di3B02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.68 52.0 4.33e-01 80.2% 72.3%
2w43A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 35.0 4.22e-01 73.6% 80.7%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 45.0 3.86e-01 72.5% 82.3%
3kyiA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.63 48.0 4.27e-01 80.2% 91.4%
4jvsA01 1.20.120.1700 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.63 45.0 4.07e-01 75.8% 69.0%
6dlzA01 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.63 43.0 3.47e-01 71.4% 70.7%
5fzsA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 47.0 4.42e-01 96.7% 67.3%
7nazA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 45.0 3.09e-01 94.5% 24.7%
3ro3A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 47.0 3.84e-01 96.7% 47.2%
2ozbE02 1.10.246.90 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Nop domain 0.60 46.0 4.39e-01 82.4% 78.5%
5xtck00 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 45.0 4.42e-01 80.2% 77.3%
1oj6A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 42.0 3.61e-01 73.6% 84.4%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 37.0 3.91e-01 87.9% 71.8%
2wb7A03 1.20.120.870 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain 0.59 54.0 4.71e-01 100.0% 77.2%
3vkgA15 1.10.8.1220 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 45.0 4.46e-01 82.4% 84.0%
3eslA01 1.20.58.2070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 40.0 4.33e-01 92.3% 85.3%
2katA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 44.0 4.04e-01 97.8% 63.5%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 40.0 4.29e-01 76.9% 84.8%
7zmgL01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 41.0 4.27e-01 76.9% 87.5%
3kezA01 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 48.0 3.45e-01 95.6% 85.1%
2d2mD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 39.0 3.49e-01 85.7% 92.4%
8fnyA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 43.0 3.29e-01 96.7% 39.8%
4me9B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 39.0 3.16e-01 82.4% 92.5%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928042 4275.1.1.0 alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.82 64.0 6.47e-01 82.4% 98.9%
3354384 601.3.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.77 47.0 4.08e-01 72.5% 41.5%
5040818 601.18.1.0 alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 0.72 51.0 5.01e-01 72.5% 74.7%
4962042 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 51.0 4.56e-01 74.7% 75.8%
3286292 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 49.0 3.13e-01 96.7% 20.3%
3276077 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 49.0 3.32e-01 100.0% 25.2%
5045518 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.60 46.0 3.46e-01 86.8% 32.3%
3933743 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 46.0 3.32e-01 96.7% 31.1%
2095496 109.4.1.1304 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_10, TPR_12 0.58 48.0 3.43e-01 97.8% 31.5%
4975227 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 49.0 4.26e-01 100.0% 63.1%
1910276 109.4.1.1499 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2, TPR_6, TPR_19 0.57 45.0 4.96e-01 94.5% 100.0%
4362692 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.56 37.0 3.61e-01 96.7% 61.0%
3320481 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 50.0 3.69e-01 100.0% 40.0%
3474099 5000.3.1.1 alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death › Bcl-2 0.54 45.0 3.66e-01 100.0% 48.8%
4997237 109.4.1.95 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.54 49.0 4.62e-01 100.0% 80.9%
3213581 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 48.0 3.86e-01 96.7% 52.1%
2559778 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 49.0 4.25e-01 95.6% 67.4%
4187493 603.1.1.103 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF29732 0.53 47.0 4.02e-01 96.7% 79.3%
3913486 109.4.1.192 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.53 49.0 3.91e-01 100.0% 54.7%
D2 high residues 46-138
PDB
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z5hA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.68 46.0 3.78e-01 100.0% 38.8%
4noiA02 2.170.120.12 Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › DNA-directed RNA polymerase, insert domain 0.62 36.0 3.32e-01 100.0% 43.0%
1wzaA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 39.0 4.22e-01 98.9% 75.9%
8dkcB01 2.170.120.12 Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › DNA-directed RNA polymerase, insert domain 0.62 37.0 3.40e-01 100.0% 43.9%
1rgxA02 2.60.40.4230 Mainly Beta › Sandwich › Immunoglobulin-like › Resistin head domain 0.61 39.0 4.38e-01 100.0% 93.8%
7o0eA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 41.0 4.35e-01 100.0% 79.5%
3fw6A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 44.0 4.11e-01 100.0% 61.5%
4fgmA01 2.60.40.3650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 45.0 3.69e-01 100.0% 43.6%
3l81A02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.59 44.0 4.22e-01 100.0% 68.2%
3aclA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 44.0 4.14e-01 100.0% 66.1%
1r17A02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 51.0 4.30e-01 100.0% 63.3%
1h6eA02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.56 43.0 4.16e-01 100.0% 72.4%
2p6cA00 2.60.120.460 Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like 0.56 49.0 4.38e-01 100.0% 99.3%
3bpsA02 2.60.120.690 Mainly Beta › Sandwich › Jelly Rolls › Proprotein convertase subtilisin/kexin type 9 0.56 41.0 3.60e-01 100.0% 49.3%
6m9sD01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 42.0 4.17e-01 100.0% 75.2%
3rnsA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 42.0 4.19e-01 100.0% 76.0%
2ww8A02 2.60.40.2110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 48.0 3.81e-01 100.0% 53.5%
2vvfA02 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 4.27e-01 100.0% 93.8%
2qjvA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 43.0 4.09e-01 100.0% 75.2%
2zbvC02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.52 45.0 4.41e-01 97.8% 95.1%
4a0tA03 2.60.320.30 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.52 42.0 4.34e-01 100.0% 96.7%
3bvxA05 2.60.40.1360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 4.02e-01 100.0% 80.2%
4madA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 45.0 4.05e-01 100.0% 91.0%
1wmdA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 4.10e-01 97.8% 100.0%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.50 45.0 4.51e-01 100.0% 97.9%
2vrqA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 42.0 3.76e-01 98.9% 65.2%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5056552 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.72 48.0 4.08e-01 100.0% 43.4%
4934579 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.70 47.0 4.09e-01 100.0% 45.7%
5053995 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.69 46.0 5.05e-01 100.0% 84.0%
4173823 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.69 47.0 3.77e-01 100.0% 37.1%
5052981 7072.1.1.0 beta sandwiches › N-terminal half of TgpA periplasmic domain › N-terminal half of TgpA periplasmic domain › N-terminal half of TgpA periplasmic domain 0.67 52.0 4.27e-01 100.0% 47.5%
3684288 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.65 47.0 4.51e-01 100.0% 66.7%
4945557 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.65 45.0 3.66e-01 100.0% 38.3%
8624 929.1.1.1 beta duplicates or obligate multimers › Resistin › Resistin › Resistin › Resistin 0.64 40.0 4.13e-01 100.0% 65.2%
5013898 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.64 49.0 3.93e-01 100.0% 41.7%
5081916 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 45.0 4.16e-01 100.0% 57.5%
5012228 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 43.0 3.96e-01 100.0% 54.2%
5059624 11.1.5.49 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › bMG10 0.63 48.0 4.28e-01 100.0% 57.7%
3705988 929.1.1.0 beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.61 43.0 4.75e-01 96.8% 97.1%
4945556 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.61 45.0 3.58e-01 100.0% 38.9%
2491354 4182.1.1.3 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.61 48.0 4.75e-01 98.9% 81.2%
5065774 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.60 46.0 4.52e-01 100.0% 75.0%
4995007 12.1.1.3 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C 0.59 41.0 4.24e-01 97.8% 80.0%
4963723 846.1.1.1 a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.59 51.0 4.50e-01 98.9% 100.0%
1823836 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.58 44.0 4.13e-01 98.9% 65.5%
5044775 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 45.0 4.36e-01 100.0% 74.3%
3404684 10.12.1.84 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.57 46.0 3.53e-01 100.0% 38.6%
3972567 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.56 45.0 4.65e-01 100.0% 91.1%
143140 11.1.5.38 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › SdrG_C_C 0.56 50.0 4.02e-01 100.0% 58.8%
4567075 10.12.1.84 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.55 44.0 3.18e-01 100.0% 28.4%
3277040 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 47.0 4.41e-01 100.0% 77.2%
5001227 1.1.4.1 beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.54 46.0 4.49e-01 96.8% 91.4%
3253503 4182.1.1.2 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin 0.53 48.0 4.77e-01 100.0% 96.8%
4388254 12.7.1.1 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolases family 2 small beta-sandwich domain › Glycosyl hydrolases family 2 small beta-sandwich domain › Glyco_hydro_106 0.53 47.0 4.34e-01 100.0% 92.5%
4295345 4178.1.1.0 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.53 45.0 3.81e-01 100.0% 56.8%
4000793 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.52 45.0 4.32e-01 98.9% 90.0%
3500032 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.52 45.0 4.22e-01 100.0% 79.2%