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IMGVR_UViG_3300020353_000173-3300020353-Ga0211613_10022993

Arc-Vir

IMGVR_UViG_3300020353_000173-3300020353-Ga0211613_10022993

Quality

89.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-155
PDB
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o8bA04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.59 30.0 4.03e-01 87.7% 90.4%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3266554 331.1.1.5 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.61 30.0 4.00e-01 78.7% 88.7%
3594109 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.58 34.0 3.50e-01 78.7% 60.7%
4958522 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.57 26.0 3.65e-01 76.1% 96.9%
3234981 633.23.1.4 alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.55 42.0 3.83e-01 79.4% 88.6%
3738183 4099.1.1.10 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.54 39.0 4.28e-01 75.5% 96.0%
3628972 633.23.1.5 alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.53 39.0 3.58e-01 76.8% 87.6%
3309440 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.51 36.0 3.67e-01 71.0% 92.0%
3529982 5.1.4.156 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 0.51 40.0 2.91e-01 83.9% 79.8%
4596174 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.51 44.0 3.63e-01 93.5% 61.1%
1548151 331.1.1.9 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › RepD-like_N 0.51 27.0 3.28e-01 74.8% 80.0%
D2 high residues 173-280
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wmyA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 48.0 3.51e-01 81.5% 73.8%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 33.0 4.18e-01 75.9% 88.7%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.62 46.0 4.88e-01 91.7% 91.3%
8aa0E01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 50.0 3.64e-01 89.8% 53.9%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 40.0 3.99e-01 89.8% 64.9%
3qc2B00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 47.0 3.29e-01 85.2% 58.0%
3sc7X01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 46.0 3.31e-01 85.2% 75.3%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.58 46.0 4.26e-01 84.3% 99.3%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.57 37.0 4.36e-01 76.9% 100.0%
1dxkA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 43.0 3.35e-01 79.6% 96.8%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 35.0 3.96e-01 78.7% 85.0%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 47.0 3.50e-01 94.4% 68.0%
3ijcA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 47.0 3.28e-01 92.6% 49.0%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 47.0 3.51e-01 94.4% 71.5%
4h5iB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 48.0 3.42e-01 100.0% 55.4%
2dg1C00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 48.0 3.42e-01 98.1% 54.4%
4yi7A02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.54 38.0 2.96e-01 75.0% 89.2%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 46.0 3.30e-01 94.4% 71.3%
2ghsA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 48.0 3.48e-01 98.1% 55.9%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.53 32.0 3.56e-01 79.6% 74.2%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.53 47.0 4.23e-01 98.1% 74.7%
2ecfA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.53 47.0 3.16e-01 100.0% 59.3%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 39.0 3.65e-01 99.1% 63.6%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 35.0 3.37e-01 91.7% 57.8%
3jb9K01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 3.12e-01 88.9% 53.2%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.52 40.0 4.07e-01 93.5% 86.4%
1ko2A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 39.0 3.13e-01 81.5% 96.5%
4hg1A00 3.40.1580.30 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › Domain of unknown function (DUF5066) 0.52 42.0 3.32e-01 87.0% 60.4%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 3.17e-01 97.2% 57.4%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.88e-01 94.4% 73.5%
3vgzC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 44.0 3.14e-01 96.3% 52.9%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3257727 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.65 50.0 4.74e-01 92.6% 67.7%
3890275 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.65 45.0 4.88e-01 88.0% 87.5%
5049624 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.62 43.0 4.55e-01 71.3% 87.4%
383967 216.1.1.7 a+b two layers › UBC-like › UBC-like › UBC-like › FANCL_d1 0.62 45.0 4.83e-01 88.0% 91.1%
3613168 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.61 52.0 3.54e-01 92.6% 52.9%
2067889 5.1.3.32 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_4 0.61 49.0 3.31e-01 86.1% 50.4%
5003966 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 36.0 4.51e-01 75.0% 100.0%
None 0.60 47.0 3.34e-01 85.2% 59.0%
4028916 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.60 41.0 4.08e-01 90.7% 68.2%
3955314 5.1.5.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.59 46.0 3.16e-01 85.2% 64.7%
2442052 5.1.3.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Fungal_lectin 0.59 46.0 4.22e-01 84.3% 95.8%
4046806 5.1.3.20 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 0.58 46.0 3.38e-01 86.1% 55.1%
4861411 5.1.4.58 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF5074 0.57 46.0 3.25e-01 85.2% 65.8%
3811678 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.57 50.0 5.06e-01 100.0% 95.4%
3441395 5.1.3.159 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7595 0.57 46.0 3.34e-01 88.0% 70.0%
3676249 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.57 48.0 4.84e-01 98.1% 89.1%
4436313 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 40.0 4.31e-01 73.1% 88.9%
4543988 4099.1.1.26 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Kre28 0.57 45.0 4.50e-01 97.2% 80.9%
4942549 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 49.0 3.59e-01 95.4% 47.5%
4505780 7544.1.1.1 a/b three-layered sandwiches › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Glycos_transf_3 0.56 43.0 3.24e-01 81.5% 81.1%
3509892 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.56 42.0 3.58e-01 78.7% 84.0%
5009392 5.1.3.127 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Tricorn_N 0.56 47.0 3.51e-01 90.7% 44.1%
5025555 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.56 46.0 3.43e-01 89.8% 57.5%
3495335 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 46.0 3.30e-01 89.8% 57.5%
2803103 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.56 48.0 3.54e-01 95.4% 56.1%
1681038 5.1.2.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_130 0.55 48.0 3.40e-01 99.1% 60.2%
4081842 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.55 41.0 3.30e-01 93.5% 40.0%
3491449 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.55 40.0 3.39e-01 78.7% 83.2%
3263883 5.1.4.32 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.55 43.0 2.87e-01 85.2% 54.1%
3468426 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 47.0 3.35e-01 96.3% 55.9%
3273166 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 45.0 3.29e-01 93.5% 44.3%
3582457 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 46.0 3.28e-01 95.4% 52.1%
3549654 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 47.0 2.71e-01 100.0% 17.9%
3345486 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.54 47.0 3.39e-01 98.1% 77.5%
3798068 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 41.0 3.27e-01 82.4% 91.6%
5019907 5.1.5.233 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PD40 0.54 49.0 3.51e-01 100.0% 64.6%
5019086 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 48.0 3.39e-01 98.1% 63.3%
1106822 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.53 42.0 3.29e-01 83.3% 96.0%
4629424 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.53 48.0 3.73e-01 99.1% 68.1%
3394329 5.1.4.45 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_3 0.53 43.0 3.03e-01 88.9% 42.2%
3622284 3075.1.1.0 a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA 0.53 43.0 2.88e-01 88.9% 46.3%
4335830 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.53 48.0 3.54e-01 99.1% 75.6%
3654176 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 45.0 3.16e-01 95.4% 57.2%
3264116 5.1.5.76 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_NOL10_N 0.52 44.0 3.13e-01 94.4% 66.3%
3417970 216.1.1.10 a+b two layers › UBC-like › UBC-like › UBC-like › FANCL_d3 0.52 37.0 3.78e-01 80.6% 76.2%
1140350 241.15.1.2 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.52 45.0 4.07e-01 98.1% 69.7%
4199219 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 46.0 3.10e-01 98.1% 42.9%
3804237 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.52 45.0 3.17e-01 96.3% 50.4%
4881907 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 43.0 3.33e-01 90.7% 67.4%
3416070 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 46.0 3.22e-01 100.0% 71.0%
3785991 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.50 37.0 3.84e-01 96.3% 82.7%
3614351 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.50 42.0 3.56e-01 91.7% 55.2%
3396057 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.50 31.0 3.43e-01 92.6% 81.2%