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IMGVR_UViG_3300020360_000137-3300020360-Ga0211712_1000093720

Arc-Vir

IMGVR_UViG_3300020360_000137-3300020360-Ga0211712_1000093720

Quality

86.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-68
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vwaA00 1.20.58.1330 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein 0.76 66.0 5.79e-01 100.0% 66.7%
1dp4A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.69 60.0 4.17e-01 100.0% 75.3%
3hyuA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.68 54.0 4.20e-01 87.5% 82.3%
2wdqC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.67 42.0 3.41e-01 70.3% 33.9%
1urvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.67 48.0 3.65e-01 76.6% 42.9%
6wk3A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.65 51.0 4.00e-01 87.5% 75.2%
1x9fC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 46.0 3.57e-01 76.6% 47.0%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.64 56.0 5.22e-01 100.0% 82.7%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.64 54.0 4.86e-01 100.0% 72.3%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 4.71e-01 100.0% 73.8%
1h99A01 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.64 54.0 4.69e-01 98.4% 97.1%
3mvcB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.63 45.0 3.48e-01 76.6% 39.6%
1x9fA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.63 46.0 3.61e-01 79.7% 46.3%
3bz6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 54.0 4.90e-01 100.0% 90.0%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 49.0 4.58e-01 87.5% 70.4%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.62 53.0 4.40e-01 96.9% 54.0%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.62 53.0 4.89e-01 100.0% 80.2%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 52.0 4.53e-01 100.0% 62.7%
1h99A02 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.60 52.0 4.46e-01 100.0% 93.4%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 48.0 4.49e-01 87.5% 76.9%
2qq6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 47.0 3.90e-01 98.4% 48.3%
7drjB01 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.59 43.0 3.08e-01 76.6% 54.6%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.59 36.0 2.90e-01 98.4% 32.0%
1vnsA01 1.20.144.10 Mainly Alpha › Up-down Bundle › Vanadium-containing Chloroperoxidase; domain 1 › Phosphatidic acid phosphatase type 2/haloperoxidase 0.59 41.0 3.02e-01 73.4% 83.4%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.59 40.0 3.13e-01 71.9% 77.0%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 49.0 4.69e-01 98.4% 82.7%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 48.0 3.78e-01 93.8% 88.7%
7qaqA01 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.58 52.0 3.54e-01 98.4% 64.8%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 49.0 3.95e-01 98.4% 47.7%
1j1jA01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.57 42.0 3.40e-01 79.7% 51.5%
3vfcA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 46.0 3.69e-01 98.4% 41.6%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.57 42.0 3.76e-01 96.9% 53.0%
1x8zB00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.56 41.0 3.17e-01 78.1% 74.1%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 46.0 3.66e-01 93.8% 89.3%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 46.0 3.59e-01 93.8% 80.0%
1x9fD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 46.0 3.64e-01 93.8% 92.1%
1jwnA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 45.0 3.56e-01 92.2% 85.5%
1abvA00 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.56 46.0 4.05e-01 98.4% 61.0%
1hbgA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 49.0 3.77e-01 100.0% 49.0%
1ds8M02 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.56 43.0 3.33e-01 89.1% 36.1%
2g2dA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.55 42.0 3.17e-01 82.8% 81.9%
2pmiB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 46.0 3.29e-01 100.0% 84.0%
3k3uA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 48.0 3.76e-01 100.0% 46.7%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.54 46.0 4.27e-01 100.0% 76.5%
2vk9A04 1.10.274.80 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.54 41.0 3.63e-01 93.8% 54.8%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 38.0 3.52e-01 78.1% 86.2%
1oj6A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 48.0 3.64e-01 100.0% 91.2%
3d0kB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 42.0 2.85e-01 95.3% 44.4%
1i5nB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.52 39.0 3.20e-01 81.2% 79.8%
6i2mB02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.52 44.0 3.65e-01 98.4% 51.6%
2idgA00 1.10.3480.10 Mainly Alpha › Orthogonal Bundle › TorD-like › TorD-like 0.52 40.0 3.00e-01 82.8% 98.7%
5w1uA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 44.0 2.60e-01 95.3% 25.7%
1a00B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 47.0 3.55e-01 100.0% 88.4%
1gcvB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 46.0 3.62e-01 100.0% 87.5%
3rfyA02 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.51 37.0 3.15e-01 76.6% 98.1%
2hoxA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 40.0 2.79e-01 84.4% 92.9%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3625478 4207.1.1.56 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › OPA1_C 0.71 59.0 4.75e-01 100.0% 46.9%
3221092 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.70 59.0 4.45e-01 93.8% 38.7%
3584608 3660.1.1.3 alpha bundles › Protein-export membrane protein secG › Protein-export membrane protein secG › Protein-export membrane protein secG › OPA1_C 0.70 58.0 4.87e-01 100.0% 53.0%
3973793 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.69 60.0 3.68e-01 100.0% 17.1%
3172113 101.1.10.48 alpha arrays › HTH › HTH › Cyclin-like › PF29927, PF29928 0.69 59.0 3.88e-01 98.4% 23.1%
3788683 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.68 50.0 3.46e-01 100.0% 22.3%
3311239 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.68 57.0 4.74e-01 100.0% 95.2%
3910779 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.67 48.0 3.63e-01 76.6% 38.7%
3379716 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.67 57.0 4.70e-01 100.0% 96.0%
3701680 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.67 58.0 5.07e-01 100.0% 83.8%
4142273 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.66 57.0 4.30e-01 100.0% 85.9%
3723625 592.2.1.2 alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.66 57.0 4.57e-01 100.0% 63.0%
3251736 109.10.1.1 alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.66 56.0 3.93e-01 100.0% 29.2%
5064355 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.66 55.0 5.06e-01 100.0% 93.3%
4520559 592.2.1.1 alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.65 57.0 5.23e-01 100.0% 76.5%
3650038 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.65 55.0 4.45e-01 100.0% 94.8%
3664835 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.65 54.0 4.50e-01 98.4% 96.0%
3690869 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 51.0 4.61e-01 100.0% 61.1%
3369798 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.65 55.0 5.08e-01 100.0% 92.9%
4311571 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.64 56.0 4.73e-01 100.0% 94.5%
3467577 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.64 54.0 4.56e-01 100.0% 96.7%
3448333 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.64 54.0 5.14e-01 100.0% 82.5%
143247 592.2.1.1 alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.64 56.0 5.19e-01 100.0% 84.1%
4871777 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.62 49.0 3.80e-01 87.5% 85.9%
169082 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.62 49.0 3.38e-01 87.5% 28.4%
3396456 592.2.1.2 alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.61 53.0 4.50e-01 100.0% 70.9%
3520337 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.61 52.0 4.42e-01 100.0% 97.4%
55657 162.1.1.0 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.61 52.0 4.72e-01 98.4% 96.7%
4172555 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.61 52.0 4.53e-01 100.0% 96.2%
3589029 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.61 52.0 4.38e-01 100.0% 90.4%
3581101 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.61 45.0 3.44e-01 84.4% 37.6%
3921 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.60 52.0 4.47e-01 100.0% 94.3%
5037670 604.39.1.0 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.60 50.0 3.80e-01 100.0% 70.9%
50204 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.59 47.0 3.81e-01 93.8% 87.2%
4002913 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.59 51.0 3.84e-01 100.0% 44.2%
3920864 621.1.1.0 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.58 49.0 3.90e-01 100.0% 46.9%
3933574 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.58 46.0 3.54e-01 87.5% 79.2%
3623877 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.58 51.0 3.82e-01 100.0% 45.6%
3997392 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.58 51.0 3.71e-01 100.0% 81.1%
3931027 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.58 51.0 3.76e-01 100.0% 44.1%
4272313 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.57 46.0 3.69e-01 93.8% 86.0%
3625495 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.57 50.0 3.77e-01 100.0% 45.6%
3302992 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.57 50.0 3.61e-01 100.0% 96.2%
3219029 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.57 42.0 3.19e-01 81.2% 75.0%
3219393 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.56 44.0 3.29e-01 87.5% 79.4%
3292 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.56 46.0 3.59e-01 93.8% 80.0%
5055517 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.56 46.0 3.72e-01 98.4% 57.1%
3990219 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.56 48.0 3.49e-01 100.0% 38.4%
3941077 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.56 47.0 3.64e-01 92.2% 90.7%
3585743 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.56 48.0 3.61e-01 100.0% 43.0%
4394019 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.55 44.0 3.65e-01 93.8% 89.2%
3518625 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.55 43.0 3.16e-01 87.5% 73.2%
3771911 109.4.1.1512 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tcp11 0.55 45.0 3.38e-01 100.0% 46.8%
3501428 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.54 47.0 3.62e-01 100.0% 47.1%
3718570 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.54 46.0 3.81e-01 100.0% 86.4%
3935113 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.54 46.0 3.40e-01 96.9% 40.6%
3798462 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.54 41.0 3.14e-01 87.5% 76.0%
3225717 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.53 45.0 3.37e-01 100.0% 41.4%
3707336 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.52 44.0 3.10e-01 100.0% 55.1%
3983501 604.39.1.14 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › MreD 0.51 44.0 3.38e-01 100.0% 72.5%
50224 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.51 46.0 3.54e-01 100.0% 88.7%
3281786 371.1.1.0 few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 0.50 39.0 3.25e-01 92.2% 71.1%