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IMGVR_UViG_3300020360_000180-3300020360-Ga0211712_100067667

Arc-Vir

IMGVR_UViG_3300020360_000180-3300020360-Ga0211712_100067667

Quality

83.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-219
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jqwC00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.71 34.0 4.49e-01 86.7% 81.0%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.71 46.0 5.60e-01 90.4% 100.0%
1yi9A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.71 37.0 4.59e-01 90.4% 79.6%
4lr4A02 2.60.120.1430 Mainly Beta › Sandwich › Jelly Rolls › 0.70 45.0 5.07e-01 91.3% 82.7%
2b39A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.70 38.0 4.99e-01 90.8% 96.6%
2id4A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.68 42.0 5.19e-01 91.3% 96.4%
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.68 34.0 4.55e-01 85.3% 88.0%
1f15B00 2.60.120.530 Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A 0.68 45.0 4.81e-01 89.9% 75.8%
1stmA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.67 42.0 5.07e-01 90.8% 95.7%
2wq4A01 2.60.120.760 Mainly Beta › Sandwich › Jelly Rolls › 0.66 40.0 5.05e-01 91.3% 100.0%
7mjrA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.65 40.0 5.00e-01 87.2% 100.0%
6fzvD01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.65 34.0 4.44e-01 87.6% 90.7%
1fmd200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 47.0 4.75e-01 91.3% 73.4%
1sfpA00 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.64 31.0 4.22e-01 87.6% 88.3%
3kq4B04 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.62 32.0 4.23e-01 87.2% 92.8%
6mnjA01 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 41.0 4.80e-01 86.7% 94.2%
4bbwA01 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 42.0 4.76e-01 87.6% 91.3%
2izwC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 46.0 4.71e-01 91.3% 80.3%
3zghA00 2.60.40.3400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 40.0 4.40e-01 89.9% 80.2%
1s55A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.61 43.0 4.98e-01 92.2% 100.0%
3demA03 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.61 32.0 4.16e-01 88.5% 93.0%
6v55A01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.60 31.0 4.19e-01 91.3% 94.6%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.60 32.0 4.22e-01 85.3% 94.9%
2ztnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 47.0 5.07e-01 91.3% 95.3%
3eb7A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 40.0 4.52e-01 89.9% 89.0%
4devD01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 34.0 4.33e-01 88.5% 97.6%
6sk6A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 48.0 4.44e-01 91.3% 69.2%
3jb8A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 45.0 4.80e-01 90.8% 94.6%
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.57 31.0 4.17e-01 86.7% 100.0%
2e26A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 40.0 4.64e-01 87.6% 98.7%
6a48A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 38.0 4.55e-01 85.8% 100.0%
1tg7A04 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 41.0 4.58e-01 100.0% 94.7%
3k4zA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 41.0 4.68e-01 87.2% 98.8%
6a48A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 37.0 4.46e-01 85.3% 100.0%
4d6gA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.56 30.0 3.72e-01 82.1% 82.3%
1pgsA02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.56 42.0 4.63e-01 90.8% 95.4%
4gwmA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 40.0 4.54e-01 87.6% 97.6%
1f35A00 2.60.120.390 Mainly Beta › Sandwich › Jelly Rolls › Olfactory marker 0.55 39.0 4.40e-01 89.4% 96.3%
5k0uB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 44.0 4.28e-01 90.4% 76.6%
1s58A00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.54 47.0 3.55e-01 92.2% 86.6%
4qc8A00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.54 46.0 3.56e-01 91.7% 87.1%
2g8gA00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.54 46.0 3.51e-01 91.7% 87.8%
1f8vC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 4.07e-01 91.3% 76.8%
1m2oA01 2.60.40.1670 Mainly Beta › Sandwich › Immunoglobulin-like › beta-sandwich domain of Sec23/24 0.53 33.0 3.85e-01 89.0% 85.4%
7k7jA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 41.0 4.52e-01 87.2% 100.0%
5z06B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 23.0 3.35e-01 85.3% 93.5%
4es8B01 2.60.120.1240 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 4.56e-01 89.0% 100.0%
1lkfA00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.51 42.0 3.87e-01 87.2% 85.3%
3og6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 26.0 3.53e-01 84.4% 100.0%
6jhsA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 4.15e-01 91.3% 88.8%
4bpzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 4.08e-01 89.4% 98.4%
3f95B00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.50 36.0 4.02e-01 87.2% 93.1%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3979069 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.79 44.0 5.90e-01 89.4% 100.0%
3252755 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.71 42.0 5.37e-01 92.7% 97.7%
1111986 10.32.1.84 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF6947 0.70 45.0 5.38e-01 91.3% 95.2%
3314257 10.32.1.193 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MP 0.70 46.0 5.04e-01 93.6% 81.1%
4266103 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.69 36.0 4.52e-01 85.8% 81.5%
3606028 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.69 38.0 4.93e-01 85.8% 96.6%
3245882 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.69 32.0 4.24e-01 84.9% 79.2%
5005781 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.68 32.0 4.46e-01 89.4% 90.5%
3895304 10.32.1.6 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein 0.68 43.0 4.60e-01 91.7% 70.8%
4648192 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.68 32.0 4.23e-01 87.6% 81.7%
3220762 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.67 36.0 4.64e-01 87.6% 89.6%
3703651 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.67 38.0 4.93e-01 90.8% 96.8%
4930609 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 39.0 4.75e-01 89.9% 87.9%
1236 10.2.1.42 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Potex_coat 0.67 42.0 5.07e-01 90.8% 95.7%
3923237 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.66 36.0 4.64e-01 88.5% 91.2%
3617942 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 36.0 4.42e-01 87.6% 82.9%
4026940 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 38.0 4.34e-01 90.8% 75.2%
4023517 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 40.0 4.96e-01 88.1% 98.5%
4971476 2499.1.1.0 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like 0.64 37.0 3.16e-01 87.2% 33.6%
3282993 10.32.1.31 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C 0.64 41.0 4.84e-01 89.0% 92.0%
3869363 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.64 33.0 4.30e-01 89.4% 88.3%
2441244 10.2.1.7 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.63 50.0 5.01e-01 91.3% 80.5%
2666438 10.2.1.6 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Polyoma_coat 0.63 57.0 4.87e-01 95.4% 80.9%
5039240 10.1.2.191 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › CBM60 0.63 39.0 4.85e-01 87.2% 100.0%
5006270 10.48.1.0 beta sandwiches › jelly-roll › Camelysin metallo-endopeptidase-like › Camelysin metallo-endopeptidase-like 0.63 44.0 4.91e-01 89.9% 90.0%
2862065 10.2.1.15 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Tymo_coat 0.62 43.0 4.77e-01 90.8% 88.6%
3928834 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 25.0 3.55e-01 87.6% 77.0%
1258 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.61 35.0 4.48e-01 89.4% 97.5%
4135739 10.32.1.18 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Endotoxin_C 0.61 40.0 4.70e-01 88.5% 94.6%
4941983 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 39.0 4.77e-01 89.4% 100.0%
4930825 10.48.1.0 beta sandwiches › jelly-roll › Camelysin metallo-endopeptidase-like › Camelysin metallo-endopeptidase-like 0.61 40.0 4.64e-01 90.4% 91.6%
5039141 10.1.2.184 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C 0.61 41.0 4.88e-01 90.8% 100.0%
4368632 10.32.1.266 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GldH_lipo 0.60 38.0 4.64e-01 89.0% 99.3%
2806413 10.2.1.4 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1 0.59 55.0 4.22e-01 99.1% 78.0%
5028929 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 40.0 4.76e-01 89.4% 100.0%
5055361 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 50.0 5.02e-01 90.4% 91.1%
2707156 10.2.1.4 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1 0.58 53.0 4.13e-01 99.5% 84.9%
3942277 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 40.0 4.69e-01 89.9% 100.0%
5044435 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 43.0 4.86e-01 89.9% 100.0%
5041016 10.1.2.181 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › CBM_4_9 0.58 43.0 4.83e-01 88.1% 100.0%
3717342 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 41.0 4.33e-01 88.5% 79.5%
4538436 10.2.1.55 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.57 34.0 4.31e-01 89.4% 98.5%
5042672 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 48.0 4.82e-01 89.9% 95.5%
5041444 10.1.2.184 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C 0.56 42.0 4.65e-01 91.3% 97.1%
3509447 10.32.1.223 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_ELAPOR1 0.55 40.0 4.50e-01 85.3% 97.0%
5032597 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 43.0 4.71e-01 89.4% 100.0%
3598578 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.55 39.0 4.39e-01 86.2% 92.4%
3473996 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.55 47.0 4.37e-01 91.7% 92.9%
3235629 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 43.0 4.71e-01 90.8% 100.0%
1232 10.2.1.7 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.55 45.0 4.70e-01 91.3% 94.9%
3525475 10.32.1.207 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_ELAPOR1-like_3rd 0.55 38.0 4.45e-01 88.1% 100.0%
3999276 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 41.0 4.42e-01 89.9% 91.4%
1176685 10.32.1.77 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Reelin_subrepeat-B 0.54 38.0 4.44e-01 87.2% 100.0%
4028561 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 38.0 4.30e-01 89.0% 94.5%
5041422 10.1.2.184 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C 0.54 45.0 4.76e-01 93.6% 100.0%
5039229 10.1.2.184 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C 0.54 43.0 4.63e-01 89.4% 97.8%
3215805 11.1.1.822 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF229 0.53 26.0 3.59e-01 83.9% 97.0%
3168473 10.32.1.306 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF30096 0.53 43.0 4.59e-01 90.4% 98.4%
5028828 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 25.0 3.59e-01 82.6% 100.0%
3949369 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 39.0 4.15e-01 88.1% 88.6%
3896267 10.32.1.69 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › LAMININ_IV_B 0.52 40.0 4.00e-01 89.0% 76.9%
3239398 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 41.0 4.46e-01 92.7% 98.9%
4132938 10.32.1.31 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C 0.52 42.0 4.51e-01 89.9% 99.5%
3937957 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 42.0 4.39e-01 94.5% 93.5%
4491474 10.32.1.31 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C 0.51 40.0 4.34e-01 89.4% 98.3%
4014910 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 34.0 3.72e-01 89.0% 80.6%
3620780 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.51 41.0 4.38e-01 89.0% 98.4%
5039139 10.1.2.184 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C 0.51 43.0 4.48e-01 89.4% 100.0%
5038400 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 43.0 4.44e-01 94.0% 95.2%