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IMGVR_UViG_3300020410_000413-3300020410-Ga0211699_1000019149

Arc-Vir

IMGVR_UViG_3300020410_000413-3300020410-Ga0211699_1000019149

Quality

85.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-115
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24653.2 best Phage_OMP 59.7 4.60e-16 100.0% 77.9%
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qq2B00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.82 76.0 5.41e-01 100.0% 46.0%
1uynX00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.80 73.0 5.09e-01 100.0% 41.6%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.75 61.0 4.72e-01 100.0% 41.1%
1bxwA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.74 66.0 5.31e-01 98.9% 65.1%
4pn0C00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.72 54.0 3.81e-01 77.8% 45.7%
1p4tA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.72 66.0 5.46e-01 100.0% 69.0%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 59.0 5.12e-01 87.8% 91.7%
2rckA01 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.72 64.0 4.77e-01 97.8% 83.0%
4meeA00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.71 63.0 4.37e-01 100.0% 38.6%
6fokB01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.71 62.0 3.72e-01 96.7% 41.3%
5dl5A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.69 62.0 3.99e-01 100.0% 25.5%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.69 62.0 5.18e-01 100.0% 63.2%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.69 59.0 5.45e-01 100.0% 74.3%
5azpA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.69 49.0 5.20e-01 75.6% 88.9%
3b8lA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 56.0 4.82e-01 88.9% 90.1%
5i97C00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.67 53.0 4.66e-01 85.6% 95.6%
3f7sA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 55.0 4.73e-01 90.0% 91.5%
3cnxA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 54.0 4.70e-01 88.9% 95.7%
2ckfB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 57.0 4.64e-01 96.7% 92.9%
2wjsA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 46.0 3.62e-01 73.3% 55.2%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 56.0 4.71e-01 93.3% 95.3%
3qlbA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.65 56.0 3.47e-01 95.6% 23.0%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 52.0 4.59e-01 85.6% 92.9%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.65 57.0 5.05e-01 94.4% 95.2%
1jkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 52.0 4.54e-01 88.9% 90.6%
3ff0A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 53.0 4.56e-01 90.0% 87.9%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 50.0 4.46e-01 85.6% 97.0%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.64 55.0 4.42e-01 100.0% 77.7%
4k7rA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.64 46.0 4.85e-01 75.6% 93.5%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.63 55.0 4.77e-01 100.0% 69.6%
1fepA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.63 56.0 3.48e-01 100.0% 26.3%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 51.0 4.45e-01 90.0% 89.4%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 50.0 4.46e-01 87.8% 93.8%
1zhxA03 2.40.160.120 Mainly Beta › Beta Barrel › Porin › 0.61 53.0 4.22e-01 98.9% 67.0%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 50.0 4.49e-01 91.1% 91.5%
2w16A03 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.61 56.0 3.39e-01 100.0% 34.3%
3bnvD00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 54.0 4.60e-01 100.0% 86.0%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.59 46.0 4.06e-01 85.6% 84.7%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.58 49.0 4.45e-01 91.1% 87.5%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 52.0 4.30e-01 100.0% 96.2%
4bumX00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.58 53.0 3.67e-01 100.0% 78.4%
1tk1A00 3.40.1500.10 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic 0.57 51.0 3.84e-01 100.0% 84.5%
5eo6B00 3.40.1500.10 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic 0.56 50.0 3.49e-01 100.0% 66.1%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.55 44.0 3.51e-01 90.0% 84.2%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 49.0 4.04e-01 100.0% 72.6%
5tseA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.53 40.0 3.57e-01 82.2% 89.0%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.53 47.0 4.01e-01 100.0% 60.7%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.53 45.0 4.30e-01 100.0% 79.8%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.52 45.0 3.65e-01 98.9% 63.7%
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 46.0 3.66e-01 98.9% 64.6%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4602917 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.81 74.0 4.94e-01 100.0% 37.0%
3965061 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.79 73.0 5.13e-01 100.0% 49.6%
4480962 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.78 72.0 4.90e-01 100.0% 37.3%
4222629 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.77 71.0 5.83e-01 100.0% 71.0%
4009827 5084.5.1.4 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.77 70.0 4.50e-01 100.0% 31.0%
3622176 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.75 67.0 4.25e-01 100.0% 34.2%
3628420 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.74 66.0 4.85e-01 100.0% 60.0%
3838398 5084.1.1.15 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.74 66.0 5.22e-01 97.8% 61.1%
3581282 883.1.1.15 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.74 66.0 4.12e-01 100.0% 29.2%
3577681 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.72 64.0 4.60e-01 100.0% 55.1%
3962922 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.72 57.0 4.70e-01 86.7% 73.9%
3164124 5084.1.1.4 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.71 63.0 5.79e-01 100.0% 90.0%
3405242 5084.5.1.37 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Attacin_N, Attacin_C 0.71 65.0 5.09e-01 100.0% 54.1%
4285298 5084.1.1.29 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF27340 0.71 65.0 5.04e-01 100.0% 65.3%
3789884 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.70 63.0 4.65e-01 100.0% 57.9%
3330525 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 56.0 4.65e-01 85.6% 85.1%
3975988 5084.3.1.2 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.69 62.0 4.47e-01 100.0% 37.7%
3975660 5084.1.1.10 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.69 62.0 4.71e-01 100.0% 70.6%
1734923 5084.5.1.4 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.69 62.0 4.00e-01 100.0% 25.5%
3998281 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.69 61.0 4.54e-01 100.0% 57.9%
3282685 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.69 53.0 4.86e-01 83.3% 97.5%
145377 5084.1.1.10 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.68 60.0 5.08e-01 98.9% 67.1%
4241521 5084.5.1.11 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.68 62.0 4.23e-01 98.9% 66.5%
2755875 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.68 63.0 3.84e-01 100.0% 28.2%
3977398 5084.1.1.16 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Ail_Lom 0.68 61.0 5.06e-01 100.0% 76.2%
3630137 883.1.1.15 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.67 59.0 3.78e-01 100.0% 34.3%
3623178 243.1.1.40 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 0.67 54.0 4.16e-01 87.8% 85.9%
5063899 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 45.0 3.40e-01 82.2% 28.6%
3727006 243.1.1.9 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF1348 0.66 53.0 4.39e-01 87.8% 70.1%
3252574 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.66 58.0 4.35e-01 98.9% 60.9%
3968185 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.65 60.0 3.78e-01 100.0% 62.0%
3307366 11.1.1.51 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.65 49.0 4.07e-01 78.9% 82.0%
4556738 7503.1.1.1 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CsgG 0.65 50.0 3.63e-01 82.2% 72.1%
3581448 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 51.0 4.72e-01 86.7% 77.4%
None 0.63 55.0 4.77e-01 100.0% 69.6%
5053966 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 46.0 4.80e-01 88.9% 81.2%
2632036 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.63 51.0 4.46e-01 90.0% 92.8%
3892200 71.2.1.4 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.62 50.0 3.64e-01 100.0% 32.3%
3933957 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.62 57.0 4.67e-01 100.0% 63.7%
2628859 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.62 51.0 4.52e-01 91.1% 97.8%
3278990 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.62 54.0 4.42e-01 100.0% 53.8%
4589836 5085.1.1.2 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › PF27489, PF29296 0.60 55.0 3.45e-01 100.0% 56.2%
3950026 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 49.0 4.36e-01 92.2% 88.8%
2029638 71.2.1.2 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › EipB_like 0.58 51.0 3.83e-01 100.0% 61.6%
4020798 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.57 50.0 3.69e-01 98.9% 67.3%
5037172 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.57 50.0 4.12e-01 96.7% 82.5%
3654131 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.56 50.0 4.13e-01 97.8% 55.6%
4582509 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.56 52.0 3.73e-01 100.0% 62.9%
3559952 71.2.1.4 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.55 49.0 3.51e-01 100.0% 35.4%
4427435 7503.1.1.22 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › PF29199 0.55 44.0 3.84e-01 90.0% 91.0%
4969674 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 43.0 2.87e-01 86.7% 26.7%
3332798 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.53 45.0 3.68e-01 96.7% 49.1%
3915600 109.4.1.109 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 0.52 48.0 2.71e-01 100.0% 14.4%
3749143 243.3.1.20 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › AKAP28 0.52 43.0 3.97e-01 95.6% 75.2%