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IMGVR_UViG_3300020423_000411-3300020423-Ga0211525_100116263
Arc-VirIMGVR_UViG_3300020423_000411-3300020423-Ga0211525_100116263
Identity
- Kingdom:
- archaea
Quality
90.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-63
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3uoaB02 | 2.60.40.3360 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.66 | 49.0 | 3.70e-01 | 81.5% | 41.9% |
| 2ra6C00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.64 | 48.0 | 3.54e-01 | 81.5% | 39.2% |
| 3gcfA01 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.64 | 46.0 | 2.99e-01 | 77.8% | 25.6% |
| 8es5A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.64 | 52.0 | 3.95e-01 | 94.4% | 53.6% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.63 | 44.0 | 3.80e-01 | 75.9% | 60.7% |
| 3pg4A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.63 | 50.0 | 3.36e-01 | 92.6% | 94.8% |
| 1wlgA02 | 2.60.98.20 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE | 0.62 | 45.0 | 3.33e-01 | 75.9% | 59.3% |
| 4h0pA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.62 | 45.0 | 3.14e-01 | 81.5% | 34.3% |
| 1f0cA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.62 | 44.0 | 3.45e-01 | 75.9% | 39.0% |
| 2qrdA00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.61 | 45.0 | 3.55e-01 | 79.6% | 58.8% |
| 2ehbD00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.61 | 46.0 | 3.55e-01 | 83.3% | 44.4% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 50.0 | 3.60e-01 | 94.4% | 68.1% |
| 4k2xB02 | 3.30.70.2450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 41.0 | 3.64e-01 | 74.1% | 68.3% |
| 3bp1A02 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.59 | 42.0 | 3.23e-01 | 77.8% | 64.7% |
| 1kfiA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.59 | 44.0 | 3.44e-01 | 81.5% | 54.4% |
| 1wuoA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.59 | 46.0 | 3.15e-01 | 92.6% | 94.5% |
| 3s5tA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.58 | 42.0 | 3.12e-01 | 77.8% | 94.8% |
| 2z5bB01 | 3.30.230.90 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.58 | 43.0 | 3.55e-01 | 88.9% | 50.4% |
| 6ro0F00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.58 | 42.0 | 3.51e-01 | 79.6% | 70.4% |
| 2m89A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 41.0 | 3.21e-01 | 81.5% | 44.0% |
| 2x5gA00 | 3.30.720.60 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.56 | 41.0 | 3.52e-01 | 79.6% | 70.3% |
| 2jdcA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 40.0 | 3.13e-01 | 81.5% | 59.3% |
| 1nbwA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 41.0 | 3.16e-01 | 81.5% | 81.8% |
| 3q9oA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 46.0 | 3.15e-01 | 100.0% | 73.6% |
| 1f9cA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.54 | 38.0 | 3.06e-01 | 77.8% | 86.1% |
| 1dpgA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 39.0 | 2.51e-01 | 81.5% | 66.3% |
| 4mfzA02 | 3.40.630.120 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › | 0.53 | 37.0 | 2.78e-01 | 75.9% | 100.0% |
| 1lyvA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 44.0 | 2.88e-01 | 100.0% | 53.0% |
| 4o01D01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.52 | 42.0 | 2.88e-01 | 92.6% | 46.9% |
| 2la7A01 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 39.0 | 3.07e-01 | 83.3% | 57.8% |
| 6g20A01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.52 | 41.0 | 2.89e-01 | 92.6% | 49.7% |
| 4xrtA02 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 39.0 | 2.92e-01 | 88.9% | 53.1% |
| 5ek8A01 | 2.60.40.3330 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 35.0 | 2.85e-01 | 77.8% | 65.9% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4329130 | 4313.1.1.1 ↗ | beta duplicates or obligate multimers › CsrA-like › CsrA-like › CsrA-like › CsrA | 0.92 | 67.0 | 7.00e-01 | 85.2% | 82.0% |
| 4141464 | 4099.1.1.22 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P | 0.70 | 50.0 | 4.04e-01 | 77.8% | 59.1% |
| 3663084 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.68 | 49.0 | 3.62e-01 | 77.8% | 55.2% |
| 3352682 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.67 | 48.0 | 4.48e-01 | 77.8% | 81.4% |
| 3904660 | 4099.1.1.10 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 | 0.65 | 45.0 | 3.13e-01 | 75.9% | 21.0% |
| 3959610 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.65 | 47.0 | 3.55e-01 | 77.8% | 47.4% |
| 3752441 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.64 | 46.0 | 3.64e-01 | 77.8% | 48.3% |
| 3955267 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.63 | 45.0 | 3.45e-01 | 77.8% | 47.0% |
| 4012405 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.62 | 44.0 | 2.65e-01 | 77.8% | 26.6% |
| 3740252 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.61 | 49.0 | 3.99e-01 | 94.4% | 77.4% |
| 3516538 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.61 | 45.0 | 3.53e-01 | 77.8% | 52.2% |
| 3937269 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.61 | 45.0 | 3.15e-01 | 81.5% | 32.4% |
| 3934097 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.60 | 44.0 | 3.33e-01 | 81.5% | 31.4% |
| 3810289 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.60 | 43.0 | 3.31e-01 | 77.8% | 67.7% |
| 3461283 | 77.1.1.8 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › PF28611 | 0.59 | 45.0 | 3.79e-01 | 85.2% | 89.8% |
| 3993090 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.58 | 47.0 | 3.33e-01 | 98.1% | 51.3% |
| 3993976 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 41.0 | 3.35e-01 | 75.9% | 56.2% |
| 396 | 2.2.1.8 ↗ | beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › Pertus-S5-tox | 0.58 | 41.0 | 3.46e-01 | 77.8% | 68.4% |
| 3770448 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.57 | 42.0 | 3.01e-01 | 79.6% | 55.9% |
| 3819893 | 5.1.4.288 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N | 0.55 | 44.0 | 2.72e-01 | 98.1% | 43.0% |
| 4797890 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.55 | 38.0 | 3.31e-01 | 72.2% | 67.1% |
| 3672898 | 295.1.1.3 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA | 0.55 | 41.0 | 3.30e-01 | 96.3% | 37.6% |
| 3210830 | 301.7.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like | 0.53 | 42.0 | 3.31e-01 | 87.0% | 69.6% |
| 3928388 | 633.33.1.1 ↗ | alpha bundles › Bromodomain-like › Rogdi › Rogdi › Rogdi_lz | 0.53 | 36.0 | 2.46e-01 | 70.4% | 19.5% |
| 5053568 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 38.0 | 2.90e-01 | 79.6% | 52.6% |
| 4016724 | 7026.1.1.0 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 | 0.52 | 40.0 | 2.76e-01 | 98.1% | 88.9% |
| 3499681 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.52 | 39.0 | 3.28e-01 | 81.5% | 58.1% |
| 3510139 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.50 | 43.0 | 2.97e-01 | 98.1% | 42.1% |