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IMGVR_UViG_3300020430_002194-3300020430-Ga0211622_100090204

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300020430_002194-3300020430-Ga0211622_100090204 ↗
Kingdom:: archaea

Quality

83.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 104-230

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2retA00	3.30.1300.30	Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like	0.68	39.0	4.67e-01	79.5%	84.5%
5bw0F00	3.30.1300.30	Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like	0.64	39.0	4.58e-01	80.3%	85.7%
3ci0K01	3.30.1300.30	Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like	0.61	43.0	4.73e-01	71.7%	95.2%
4ew7A00	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.56	33.0	3.55e-01	71.7%	65.5%
3wa5B00	2.60.120.1690	Mainly Beta › Sandwich › Jelly Rolls ›	0.54	30.0	3.03e-01	92.1%	51.6%
2rs7A01	3.30.160.20	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.52	30.0	3.65e-01	78.0%	93.2%
3t1oA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.52	31.0	2.72e-01	71.7%	37.5%
4brcA02	3.30.420.150	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2	0.51	44.0	3.64e-01	98.4%	52.6%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3726755	2008.1.1.143 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924	0.69	46.0	3.42e-01	92.9%	28.9%
3725833	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.64	46.0	3.46e-01	73.2%	35.3%
3503347	223.1.1.18 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_4	0.59	50.0	4.35e-01	90.6%	79.5%
3605618	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.59	40.0	3.76e-01	74.8%	57.1%
4174189	223.1.1.0 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains	0.56	38.0	3.88e-01	73.2%	70.4%
3437304	11.2.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain	0.54	32.0	3.62e-01	71.7%	77.9%
3804111	3887.2.1.1 ↗	a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung	0.53	38.0	3.91e-01	74.0%	83.2%
4056618	274.1.1.0 ↗	a+b two layers › Pili subunits › Pili subunits › Pili subunits	0.53	36.0	3.66e-01	70.1%	76.0%
3850124	223.2.1.4 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN	0.52	44.0	3.82e-01	94.5%	88.3%
3264429	11.1.1.801 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7035	0.52	32.0	3.17e-01	84.3%	55.7%
3728883	3692.1.1.0 ↗	a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain	0.51	38.0	3.57e-01	77.2%	91.5%

D2 high residues 290-389

PDB

Domain cluster: rep: IMGVR_UViG_3300017910_001187-3300017910-Ga0192369_10652626__D362-481

D3 medium residues 37-103_248-289

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3vadA01	1.20.140.20	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Alpha-ketoacid/pyruvate dehydrogenase kinase, N-terminal domain	0.59	46.0	4.11e-01	82.6%	99.4%
1a7eA00	1.20.120.50	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like	0.58	43.0	4.24e-01	79.8%	87.3%
4w8pA02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.56	41.0	3.92e-01	78.0%	99.2%
1cpqA00	1.20.120.10	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562	0.54	38.0	3.66e-01	72.5%	98.4%
4gr2A00	1.10.1200.210	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX	0.54	38.0	3.86e-01	72.5%	73.6%
1f1mA00	1.20.120.240	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6	0.51	37.0	3.29e-01	76.1%	90.7%
2x1dA02	1.10.10.2120	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.51	28.0	3.24e-01	71.6%	75.7%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5005610	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.64	45.0	4.76e-01	73.4%	100.0%
4479551	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.59	41.0	4.40e-01	92.7%	85.6%
54301	633.15.1.0 ↗	alpha bundles › Bromodomain-like › alpha-ketoacid dehydrogenase kinase-N › alpha-ketoacid dehydrogenase kinase-N	0.57	43.0	3.91e-01	80.7%	99.3%
None	—		0.51	42.0	2.67e-01	91.7%	40.6%