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IMGVR_UViG_3300020430_002194-3300020430-Ga0211622_100090208

Arc-Vir

IMGVR_UViG_3300020430_002194-3300020430-Ga0211622_100090208

Identity

Kingdom:
archaea

Quality

89.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-77
PDB
Domain cluster: rep: IMGVR_UViG_3300046450_002951-3300046450-Ga0491204_0024708_4709_4948__D9-78
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g12A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 48.0 3.84e-01 80.6% 89.3%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.59 32.0 3.54e-01 75.0% 66.7%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.59 44.0 4.69e-01 84.7% 100.0%
4kxfB02 1.10.1900.50 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › 0.59 41.0 4.54e-01 95.8% 94.7%
2uytA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 39.0 2.78e-01 72.2% 92.2%
3pvlA03 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.56 39.0 3.37e-01 73.6% 73.7%
3zfvA02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 42.0 3.31e-01 86.1% 74.4%
2rp5A00 1.10.150.830 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.52 40.0 3.52e-01 87.5% 70.1%
2janA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.51 37.0 3.32e-01 76.4% 76.2%
1r6bX03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 40.0 3.87e-01 100.0% 75.0%
3vkhB07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 39.0 2.90e-01 81.9% 98.4%
1g5bB00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.51 38.0 2.87e-01 87.5% 89.1%
4p72A04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.50 42.0 4.16e-01 97.2% 94.7%
4dllB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.50 38.0 3.23e-01 84.7% 96.9%
8a0rA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 35.0 2.96e-01 73.6% 83.8%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3195703 103.5.1.6 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › FRG1 0.70 43.0 5.08e-01 73.6% 100.0%
3482077 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.69 47.0 5.29e-01 86.1% 92.7%
5022861 103.5.1.4 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.67 53.0 5.40e-01 100.0% 88.6%
4959812 103.5.1.4 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.64 54.0 4.70e-01 93.1% 88.2%
None — 0.64 52.0 3.26e-01 88.9% 25.7%
4960805 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.64 46.0 4.98e-01 91.7% 91.7%
4952657 103.5.1.4 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.63 47.0 5.02e-01 79.2% 95.0%
4953164 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.62 44.0 4.92e-01 94.4% 98.2%
3801591 524.1.1.0 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p 0.60 43.0 3.91e-01 77.8% 63.8%
4251437 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.60 49.0 3.11e-01 90.3% 26.1%
3247641 103.15.1.0 ↗ alpha arrays › RuvA-C › Mitoribosomal protein mS23 › Mitoribosomal protein mS23 0.59 43.0 3.90e-01 79.2% 64.8%
3195511 131.2.1.3 ↗ alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd 0.59 46.0 3.04e-01 86.1% 36.1%
4167114 131.2.1.0 ↗ alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like 0.58 48.0 3.15e-01 93.1% 42.1%
3243984 524.1.1.0 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p 0.55 43.0 3.61e-01 95.8% 48.8%
4825592 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.55 42.0 3.34e-01 87.5% 83.1%
3290287 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 44.0 2.81e-01 97.2% 23.6%
3829031 193.1.1.3 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › Ndc80_HEC 0.54 39.0 3.37e-01 77.8% 78.3%
5082325 3705.1.1.3 ↗ alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Phage_holin_6_1 0.53 38.0 3.85e-01 75.0% 78.6%
3393633 592.1.1.2 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › Helicase_PWI 0.53 36.0 3.26e-01 70.8% 51.0%
4025804 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 43.0 3.52e-01 100.0% 52.5%
3945748 162.1.1.1 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.52 44.0 4.04e-01 94.4% 100.0%
3393434 108.1.1.123 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_EFHB_C 0.51 36.0 3.47e-01 81.9% 62.4%