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IMGVR_UViG_3300020449_000582-3300020449-Ga0211642_100048441

Arc-Vir

IMGVR_UViG_3300020449_000582-3300020449-Ga0211642_100048441

Identity

Kingdom:
archaea

Quality

88.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-182
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.66 27.0 3.99e-01 88.9% 88.3%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.63 50.0 4.15e-01 100.0% 48.8%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 39.0 2.96e-01 86.1% 26.6%
3actA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.56 50.0 4.03e-01 100.0% 50.4%
1snzB00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 50.0 3.73e-01 95.8% 48.5%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 37.0 3.72e-01 84.0% 65.5%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.56 48.0 3.95e-01 97.2% 51.3%
1wibA00 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.54 27.0 3.28e-01 71.5% 71.7%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 45.0 3.63e-01 91.0% 83.1%
5c33A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.54 38.0 3.56e-01 84.7% 58.3%
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 43.0 4.02e-01 84.7% 78.5%
1cb8A03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.53 31.0 3.48e-01 86.1% 73.6%
2b5lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 3.22e-01 90.3% 49.7%
2rgqB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 4.33e-01 96.5% 94.0%
6nobA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 41.0 3.03e-01 84.7% 33.2%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.51 25.0 3.13e-01 98.6% 75.6%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 26.0 3.37e-01 83.3% 90.7%
1o7dD01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.50 42.0 3.48e-01 91.0% 92.0%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3562322 355.1.1.14 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › PF30706 0.83 78.0 6.71e-01 100.0% 67.1%
4028728 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.70 27.0 4.38e-01 88.9% 94.5%
3258377 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.63 36.0 4.49e-01 85.4% 91.1%
3670829 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.61 42.0 3.16e-01 91.7% 30.0%
3359496 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.59 41.0 3.34e-01 85.4% 37.5%
3921815 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 41.0 3.33e-01 72.2% 59.6%
3447587 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.58 40.0 3.10e-01 84.7% 30.8%
3436743 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.58 39.0 2.99e-01 85.4% 30.3%
3953439 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 28.0 3.72e-01 86.1% 91.4%
3984778 12.3.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.57 49.0 4.21e-01 93.8% 67.1%
3166311 12.3.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.56 49.0 3.76e-01 95.8% 49.0%
3383213 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.55 39.0 3.05e-01 83.3% 34.1%
5039963 12.3.1.12 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_transf_36 0.55 43.0 3.65e-01 92.4% 49.0%
3193880 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 45.0 3.26e-01 91.7% 68.5%
4398251 5087.3.1.1 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.53 32.0 2.36e-01 96.5% 23.0%
3437488 5.1.3.159 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7595 0.52 36.0 2.94e-01 85.4% 36.4%
3743052 5.1.4.78 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.52 43.0 3.05e-01 88.2% 36.7%
4073110 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.51 46.0 3.76e-01 99.3% 73.0%
5025972 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.50 42.0 3.52e-01 89.6% 86.9%