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IMGVR_UViG_3300020453_000736-3300020453-Ga0211550_100036151
Arc-VirIMGVR_UViG_3300020453_000736-3300020453-Ga0211550_100036151
Identity
- Kingdom:
- archaea
Quality
91.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 203-260
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1w36C06 | 1.10.10.990 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.70 | 53.0 | 5.05e-01 | 86.2% | 83.3% |
| 3q18A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.69 | 50.0 | 3.96e-01 | 77.6% | 64.7% |
| 2i1yA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.65 | 50.0 | 3.23e-01 | 86.2% | 32.8% |
| 1xriA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.65 | 50.0 | 3.80e-01 | 87.9% | 53.0% |
| 2cwyA00 | 1.10.3450.10 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like | 0.63 | 47.0 | 4.09e-01 | 81.0% | 65.6% |
| 3jamD02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.63 | 45.0 | 3.52e-01 | 77.6% | 65.4% |
| 3g0oA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.61 | 45.0 | 3.57e-01 | 79.3% | 91.7% |
| 1ef4A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 46.0 | 4.72e-01 | 86.2% | 90.9% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 43.0 | 4.01e-01 | 79.3% | 62.8% |
| 5je8B02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.58 | 44.0 | 3.52e-01 | 86.2% | 93.0% |
| 2uyyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.57 | 44.0 | 3.52e-01 | 86.2% | 91.9% |
| 1aa7A02 | 1.10.10.180 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Influenza matrix protein M1, N-terminal subdomain 2 | 0.57 | 46.0 | 4.26e-01 | 96.6% | 74.4% |
| 5ow2A00 | 1.10.10.930 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 40.0 | 3.76e-01 | 74.1% | 64.4% |
| 2lvsA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.56 | 40.0 | 4.06e-01 | 75.9% | 85.7% |
| 1fcdC01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.55 | 37.0 | 3.46e-01 | 70.7% | 88.5% |
| 2r0qC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.55 | 44.0 | 4.56e-01 | 91.4% | 96.4% |
| 2ew2A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.54 | 41.0 | 3.26e-01 | 86.2% | 56.0% |
| 5ez1A01 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.53 | 39.0 | 3.36e-01 | 81.0% | 88.0% |
| 3m1mA03 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.52 | 43.0 | 3.63e-01 | 100.0% | 72.7% |
| 1y0uA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 41.0 | 3.74e-01 | 96.6% | 86.5% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4184822 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.91 | 84.0 | 4.68e-01 | 100.0% | 9.2% |
| 4968033 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.89 | 83.0 | 4.65e-01 | 100.0% | 9.7% |
| 4938477 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.86 | 78.0 | 5.17e-01 | 100.0% | 28.8% |
| 5060617 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.69 | 50.0 | 4.00e-01 | 77.6% | 50.4% |
| 4965520 | 101.1.1.556 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF7317 | 0.67 | 47.0 | 4.79e-01 | 74.1% | 80.0% |
| 4943227 | 101.1.1.63 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 | 0.67 | 46.0 | 5.09e-01 | 75.9% | 95.6% |
| 4499345 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 46.0 | 4.85e-01 | 75.9% | 94.0% |
| 4441096 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.65 | 46.0 | 4.60e-01 | 75.9% | 73.3% |
| 3680789 | 2004.1.1.505 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11, AAA_30 | 0.65 | 48.0 | 2.90e-01 | 79.3% | 53.4% |
| 3282612 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.65 | 48.0 | 3.70e-01 | 79.3% | 73.1% |
| 3958866 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.64 | 47.0 | 3.45e-01 | 77.6% | 97.3% |
| 3601326 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 44.0 | 4.34e-01 | 74.1% | 75.4% |
| 4970237 | 101.1.1.371 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 | 0.64 | 45.0 | 4.84e-01 | 74.1% | 95.6% |
| 3290277 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.64 | 43.0 | 4.57e-01 | 75.9% | 84.0% |
| 3857628 | 101.1.3.29 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › CENP-B_N | 0.64 | 45.0 | 4.44e-01 | 87.9% | 69.2% |
| 3345495 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.61 | 45.0 | 4.81e-01 | 82.8% | 100.0% |
| None | — | 0.59 | 44.0 | 4.67e-01 | 84.5% | 100.0% | |
| 3602900 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.59 | 45.0 | 3.62e-01 | 87.9% | 76.2% |
| 4464384 | 198.2.1.1 ↗ | alpha arrays › Saposin-like › Bacteriocin AS-48-related › Bacteriocin AS-48-related › Bacteriocin_IId | 0.58 | 43.0 | 4.14e-01 | 82.8% | 75.7% |
| 4028663 | 545.1.2.0 ↗ | alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Sporozoite protein UIS3 soluble domain | 0.56 | 41.0 | 3.45e-01 | 82.8% | 61.7% |
| 4944123 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.55 | 46.0 | 3.64e-01 | 100.0% | 43.8% |
| 5033486 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.53 | 45.0 | 3.49e-01 | 100.0% | 87.1% |
| 5059222 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.53 | 45.0 | 3.63e-01 | 100.0% | 47.5% |
D2
medium
residues 3-164
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01642.29 best | MM_CoA_mutase | 141.5 | 4.20e-41 | 96.3% | 29.3% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e1cA01 | 3.20.20.240 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Methylmalonyl-CoA mutase | 0.94 | 91.0 | 6.05e-01 | 100.0% | 31.0% |
| 1reqB01 | 3.20.20.240 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Methylmalonyl-CoA mutase | 0.93 | 90.0 | 6.30e-01 | 100.0% | 37.1% |
| 1xrsA00 | 3.20.20.440 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › D-Lysine 5,6-aminomutase alpha subunit | 0.83 | 67.0 | 4.55e-01 | 93.2% | 26.2% |
| 1ccwB01 | 3.20.20.240 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Methylmalonyl-CoA mutase | 0.81 | 72.0 | 5.22e-01 | 95.1% | 36.7% |
| 3kp1A01 | 3.20.20.440 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › D-Lysine 5,6-aminomutase alpha subunit | 0.80 | 68.0 | 4.94e-01 | 96.3% | 35.1% |
| 3cqjA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.50 | 40.0 | 3.36e-01 | 84.6% | 89.9% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4184822 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.98 | 95.0 | 6.02e-01 | 100.0% | 24.7% |
| 4968033 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.97 | 94.0 | 6.04e-01 | 100.0% | 26.4% |
| 4936793 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.96 | 93.0 | 6.06e-01 | 100.0% | 28.9% |
| 4963790 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.96 | 93.0 | 6.09e-01 | 100.0% | 30.5% |
| 4938477 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.95 | 70.0 | 6.25e-01 | 75.3% | 56.7% |
| 4369287 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.95 | 92.0 | 6.09e-01 | 100.0% | 30.2% |
| 3958236 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.94 | 92.0 | 6.02e-01 | 100.0% | 29.2% |
| 4133148 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.94 | 92.0 | 5.97e-01 | 100.0% | 28.2% |
| 4591497 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.94 | 91.0 | 6.18e-01 | 100.0% | 33.9% |
| 4042297 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.93 | 90.0 | 6.20e-01 | 100.0% | 34.8% |
| 3949726 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.93 | 90.0 | 6.10e-01 | 100.0% | 33.6% |
| 3951770 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.92 | 90.0 | 6.16e-01 | 100.0% | 35.4% |
| 5051522 | 2002.1.1.158 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Lys-AminoMut_A | 0.83 | 66.0 | 4.54e-01 | 93.2% | 26.2% |
| 4336497 | 3269.1.1.1 ↗ | alpha arrays › D-ornithine aminomutase S component-related › D-ornithine aminomutase S component-related › D-ornithine aminomutase S component-related › Lys-AminoMut_A | 0.82 | 67.0 | 4.56e-01 | 93.2% | 26.9% |
| 8656 | 2002.1.1.143 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Met_asp_mut_E | 0.80 | 76.0 | 5.26e-01 | 100.0% | 44.1% |
| 3282757 | 2002.1.1.143 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Met_asp_mut_E | 0.73 | 69.0 | 5.00e-01 | 100.0% | 47.1% |