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IMGVR_UViG_3300020454_001918-3300020454-Ga0211548_100008341

Arc-Vir

IMGVR_UViG_3300020454_001918-3300020454-Ga0211548_100008341

Quality

90.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 106-201_381-433
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12849.13 best PBP_like_2 32.8 9.00e-08 63.1% 24.0%
D2 high residues 204-373
PDB
D3 high residues 441-544_722-758
PDB
D4 high residues 894-1062
PDB
D5 medium residues 566-690
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jwoA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.90 68.0 6.47e-01 100.0% 67.8%
4ecfA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.88 61.0 6.19e-01 100.0% 72.1%
4ombA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.88 69.0 6.52e-01 100.0% 70.1%
4n13A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.86 67.0 6.44e-01 100.0% 73.0%
1twyD02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.85 64.0 6.22e-01 100.0% 71.9%
1a40A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.72 61.0 5.49e-01 100.0% 67.5%
4lvqA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.72 61.0 5.45e-01 100.0% 66.9%
1pc3A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.71 64.0 5.51e-01 100.0% 64.1%
2pvuA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.70 42.0 4.69e-01 100.0% 75.5%
1xt8A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.70 41.0 4.67e-01 100.0% 78.0%
4dz1A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.70 44.0 4.91e-01 100.0% 79.8%
2rcaA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.70 47.0 4.95e-01 100.0% 76.6%
1wdnA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.69 41.0 4.59e-01 100.0% 76.0%
1zbmA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.69 38.0 4.32e-01 100.0% 71.7%
6lkkA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.69 48.0 4.70e-01 100.0% 65.7%
4i62A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.68 40.0 4.59e-01 100.0% 78.5%
5aa2B02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.68 42.0 4.72e-01 100.0% 80.2%
4z9nA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.67 41.0 4.47e-01 100.0% 72.8%
4x9tA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.67 43.0 4.35e-01 100.0% 65.3%
2pyyA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.67 39.0 4.50e-01 100.0% 78.3%
5wjpA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.67 39.0 4.44e-01 100.0% 75.8%
3i6vA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.66 36.0 4.34e-01 100.0% 79.8%
1nnfA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.66 49.0 4.58e-01 100.0% 63.2%
2q88A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.65 41.0 4.46e-01 100.0% 76.5%
2capA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.65 60.0 5.56e-01 100.0% 79.5%
5bwjD02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.63 38.0 4.40e-01 99.2% 83.3%
4r75A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.63 45.0 4.23e-01 100.0% 60.6%
3qslA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.62 39.0 3.31e-01 76.8% 38.3%
3mamA02 3.40.190.120 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Osmoprotection protein (prox); domain 2 0.62 38.0 4.12e-01 100.0% 73.1%
4q7eA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 32.0 3.28e-01 70.4% 55.2%
4ombA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 37.0 3.46e-01 82.4% 55.8%
2z1dA01 3.40.50.11750 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HypD, alpha/beta domain 1 0.51 36.0 3.48e-01 83.2% 63.8%
2o20A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 37.0 3.60e-01 97.6% 68.6%
4ap5A02 3.40.50.11350 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 38.0 3.49e-01 99.2% 59.3%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4930873 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.93 70.0 6.57e-01 100.0% 66.2%
4088717 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.93 67.0 6.39e-01 100.0% 65.7%
4967573 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.93 65.0 5.84e-01 100.0% 55.6%
5002826 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.92 64.0 6.37e-01 100.0% 68.5%
4968764 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.92 64.0 6.33e-01 100.0% 68.5%
4947571 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.90 66.0 6.29e-01 100.0% 66.4%
1518863 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.90 68.0 6.44e-01 100.0% 66.9%
1520279 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.90 62.0 6.06e-01 100.0% 65.2%
4962301 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.89 63.0 6.08e-01 100.0% 65.0%
4936246 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.89 63.0 6.27e-01 100.0% 70.0%
5072580 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.89 62.0 6.14e-01 100.0% 68.5%
5041427 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.88 71.0 6.79e-01 100.0% 74.3%
3971070 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.88 63.0 6.20e-01 100.0% 70.0%
4888477 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.86 52.0 5.44e-01 92.8% 65.8%
1518768 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.85 64.0 6.23e-01 100.0% 71.9%
5022269 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.85 65.0 6.06e-01 100.0% 66.0%
4981137 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.81 71.0 6.53e-01 100.0% 73.5%
3386891 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.78 71.0 6.44e-01 100.0% 75.0%
4929664 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.78 62.0 5.34e-01 100.0% 56.2%
3010938 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.77 59.0 5.32e-01 100.0% 60.7%
3290296 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.76 62.0 5.88e-01 100.0% 73.8%
5049984 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.74 44.0 5.07e-01 100.0% 81.1%
4933991 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.73 64.0 5.42e-01 100.0% 59.5%
4531984 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.72 62.0 5.25e-01 100.0% 58.4%
3985645 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.72 62.0 5.36e-01 100.0% 62.2%
3603435 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.72 65.0 5.49e-01 100.0% 61.0%
3965932 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.72 62.0 5.38e-01 100.0% 62.8%
3951711 7523.1.1.8 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 0.71 63.0 5.43e-01 100.0% 62.1%
3947053 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.71 42.0 4.90e-01 100.0% 82.2%
4797422 7523.1.1.30 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_11 0.69 48.0 5.11e-01 100.0% 80.4%
4950494 7523.1.1.5 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PDT 0.68 36.0 4.32e-01 96.0% 77.5%
1520965 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.68 40.0 4.57e-01 100.0% 77.7%
3237484 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.66 46.0 4.77e-01 100.0% 75.0%
3945816 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.66 42.0 4.62e-01 100.0% 79.0%
3938249 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.66 46.0 4.70e-01 100.0% 75.0%
3252338 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.65 46.0 4.85e-01 100.0% 81.8%
3459249 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.62 38.0 3.89e-01 97.6% 62.5%
1518842 7523.1.1.19 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › NMT1 0.62 39.0 4.53e-01 76.8% 90.8%
3625146 2007.1.3.37 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Mut7-C 0.58 40.0 3.97e-01 89.6% 65.9%
2512882 7523.1.1.2 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Transferrin 0.58 34.0 4.02e-01 74.4% 83.1%
5015873 7523.1.1.4 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3 0.56 39.0 3.85e-01 79.2% 68.5%
5080030 7523.1.1.30 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_11 0.55 50.0 4.39e-01 100.0% 69.7%
3938390 7527.1.1.2 a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 0.54 35.0 2.78e-01 97.6% 29.3%
2714483 7523.1.1.2 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Transferrin 0.54 35.0 3.89e-01 87.2% 86.2%
3965195 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.53 43.0 3.66e-01 89.6% 74.1%
5073564 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.52 35.0 3.09e-01 98.4% 44.7%
4248523 2006.1.4.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 0.51 39.0 3.87e-01 95.2% 78.5%
3953732 2004.1.1.63 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FtsK_SpoIIIE 0.51 41.0 3.08e-01 86.4% 62.9%
4075160 2003.1.1.7 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ELFV_dehydrog 0.50 39.0 3.34e-01 97.6% 50.2%
D6 medium residues 808-887_1074-1103
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1avvA00 3.30.62.10 Alpha Beta › 2-Layer Sandwich › Nef Regulatory Factor › Nef Regulatory Factor 0.56 30.0 3.20e-01 80.0% 56.6%
4n0hA00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.53 46.0 3.12e-01 99.1% 36.1%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3542513 386.1.1.286 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf_ZIC, zf-C2H2_15 0.56 23.0 2.96e-01 70.9% 63.3%