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IMGVR_UViG_3300020462_000470-3300020462-Ga0211546_100007413

Arc-Vir

IMGVR_UViG_3300020462_000470-3300020462-Ga0211546_100007413

Quality

91.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-50_132-272
PDB
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7l6yA01 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.58 53.0 5.14e-01 100.0% 88.8%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4973809 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.52 29.0 3.61e-01 100.0% 87.5%
4949720 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.52 29.0 3.67e-01 100.0% 91.3%
5020494 304.18.1.0 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS 0.50 20.0 2.76e-01 97.4% 70.0%
D2 high residues 54-129
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a3qA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.71 50.0 4.31e-01 100.0% 49.6%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 47.0 4.74e-01 84.2% 71.8%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.66 48.0 4.61e-01 77.6% 97.8%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 50.0 5.15e-01 81.6% 94.5%
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 49.0 3.87e-01 81.6% 45.1%
6yttA01 1.10.8.190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Carbon monoxide dehydrogenase alpha subunit. Chain M, domain 1 0.64 51.0 4.69e-01 100.0% 66.0%
2x1lA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.63 52.0 4.01e-01 90.8% 50.6%
2q9rA01 1.20.1590.10 Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like 0.63 54.0 4.09e-01 98.7% 47.7%
1mhyG01 1.20.1280.10 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 1 0.63 46.0 4.81e-01 89.5% 88.2%
1zklA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.63 52.0 3.45e-01 93.4% 95.3%
4arvA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.62 52.0 4.51e-01 96.1% 89.7%
6ldkA01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.62 52.0 3.99e-01 92.1% 50.6%
3buxB01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.62 42.0 3.58e-01 71.1% 43.4%
6a95A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 46.0 3.93e-01 80.3% 60.3%
2ntxA02 1.20.58.1310 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 2 0.61 50.0 4.48e-01 88.2% 66.0%
4dxwA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 52.0 4.63e-01 100.0% 68.8%
7e84A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 52.0 4.41e-01 100.0% 59.3%
1zp2A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 43.0 3.83e-01 100.0% 52.2%
2uubT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.59 45.0 4.20e-01 84.2% 70.7%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.58 54.0 3.97e-01 100.0% 78.7%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.57 44.0 4.15e-01 84.2% 85.9%
3uarA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 42.0 3.84e-01 81.6% 72.0%
6f1eA01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.57 46.0 3.87e-01 92.1% 64.0%
4o6kA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.56 48.0 4.08e-01 98.7% 65.4%
3vhlA02 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.56 44.0 3.85e-01 88.2% 70.8%
2ddhA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.55 41.0 3.60e-01 80.3% 52.5%
3sf6A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.55 44.0 3.73e-01 88.2% 51.9%
4ffbC00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.55 45.0 3.28e-01 93.4% 82.7%
2kvsA00 1.10.150.260 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like 0.55 46.0 4.60e-01 98.7% 88.7%
2qksA01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 47.0 4.24e-01 98.7% 68.9%
1g6hA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 45.0 3.13e-01 96.1% 27.2%
1jvmB00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 48.0 4.43e-01 100.0% 76.0%
2ix5A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.54 43.0 3.62e-01 86.8% 49.3%
2nr9A00 1.20.1540.10 Mainly Alpha › Up-down Bundle › Rhomboid-like fold › Rhomboid-like 0.54 45.0 3.50e-01 100.0% 53.1%
1svmA01 1.10.10.510 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain 0.54 41.0 3.98e-01 94.7% 72.2%
1xx7A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.53 46.0 3.56e-01 96.1% 56.4%
2fq4A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 41.0 3.47e-01 86.8% 56.9%
4g1uD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 45.0 3.16e-01 94.7% 29.2%
3gfoA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 3.02e-01 94.7% 27.5%
3cuxA02 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.52 43.0 3.80e-01 94.7% 77.7%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 38.0 3.88e-01 100.0% 78.9%
4i1eA03 1.25.10.30 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain 0.51 43.0 3.64e-01 98.7% 91.4%
3ljcA02 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 39.0 3.38e-01 85.5% 56.3%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4997392 3930.1.1.3 alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical 0.75 68.0 5.47e-01 100.0% 53.6%
5067508 3930.1.1.3 alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical 0.74 67.0 5.41e-01 100.0% 54.1%
5079385 3930.1.1.3 alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical 0.73 67.0 5.45e-01 100.0% 55.6%
5055943 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 52.0 4.73e-01 81.6% 85.0%
488142 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.67 58.0 5.28e-01 97.4% 96.1%
3606768 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 50.0 3.23e-01 81.6% 18.1%
3245014 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 48.0 3.61e-01 77.6% 33.3%
5032064 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.65 50.0 5.01e-01 84.2% 91.1%
3219553 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.64 58.0 4.60e-01 100.0% 80.7%
3660430 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 56.0 4.05e-01 97.4% 52.1%
3322831 109.4.1.576 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exportin-5 0.64 50.0 3.24e-01 84.2% 54.6%
3188597 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.63 49.0 4.71e-01 84.2% 92.2%
3627573 192.17.1.10 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › eIF-3c_N 0.63 54.0 4.67e-01 93.4% 80.9%
3768254 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.61 52.0 4.92e-01 97.4% 100.0%
3730806 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.61 54.0 4.60e-01 100.0% 79.2%
3617829 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.61 47.0 4.06e-01 85.5% 88.0%
3703277 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.60 51.0 5.30e-01 89.5% 98.6%
3970391 7014.1.1.2 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE 0.60 50.0 3.59e-01 94.7% 100.0%
4276261 604.12.1.67 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › eIF-3c_N 0.59 53.0 4.32e-01 98.7% 69.3%
3391350 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.59 53.0 4.44e-01 100.0% 62.3%
3598955 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.59 51.0 4.58e-01 96.1% 80.0%
4949943 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.58 47.0 3.28e-01 96.1% 26.5%
3659915 192.7.1.45 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Na_sulph_symp 0.57 46.0 4.68e-01 88.2% 97.3%
3739048 101.1.2.552 alpha arrays › HTH › HTH › winged helix domain › eIF-3c_N 0.57 51.0 4.51e-01 98.7% 80.9%
4930413 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.57 45.0 4.25e-01 100.0% 70.5%
3857450 5054.1.1.1 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan 0.57 51.0 4.03e-01 100.0% 52.9%
5075323 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.56 46.0 3.22e-01 96.1% 27.1%
4962677 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.56 47.0 3.23e-01 96.1% 26.4%
4936204 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.56 46.0 3.21e-01 96.1% 26.5%
None 0.56 46.0 3.15e-01 96.1% 25.6%
4641447 5054.1.1.6 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.56 46.0 4.11e-01 97.4% 63.6%
4216527 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.55 45.0 4.06e-01 92.1% 91.8%
None 0.55 47.0 3.30e-01 94.7% 28.8%
4975140 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.55 45.0 3.20e-01 96.1% 28.9%
3590939 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.55 45.0 3.12e-01 94.7% 25.7%
4936214 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.55 47.0 3.24e-01 94.7% 27.5%
1389123 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.55 45.0 3.15e-01 96.1% 26.8%
4387971 2004.1.1.417 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.55 45.0 3.14e-01 96.1% 27.6%
4850957 141.1.1.1 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › polyprenyl_synt 0.55 44.0 3.42e-01 89.5% 48.3%
4554575 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.54 46.0 3.25e-01 94.7% 30.0%
5078449 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.54 44.0 3.13e-01 94.7% 28.7%
3691790 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.54 43.0 2.81e-01 96.1% 18.2%
3942352 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 45.0 3.29e-01 94.7% 32.7%
5043582 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 45.0 3.16e-01 96.1% 28.3%
None 0.53 45.0 3.15e-01 96.1% 27.5%
4958593 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 44.0 3.07e-01 97.4% 27.0%
4995583 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 43.0 3.03e-01 96.1% 27.6%
3591633 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.52 46.0 4.01e-01 100.0% 65.5%
3284468 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.52 34.0 3.33e-01 93.4% 59.1%
3609222 5051.1.1.6 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.50 41.0 2.63e-01 92.1% 71.1%