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IMGVR_UViG_3300020472_003905-3300020472-Ga0211579_100138643
Arc-VirIMGVR_UViG_3300020472_003905-3300020472-Ga0211579_100138643
Identity
- Kingdom:
- archaea
Quality
87.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 348-456
Domain cluster:
rep: IMGVR_UViG_3300017910_001187-3300017910-Ga0192369_10652626__D362-481
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kstA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.62 | 54.0 | 4.00e-01 | 96.3% | 71.1% |
| 1sgoA01 | 3.30.2280.10 | Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) | 0.62 | 46.0 | 4.63e-01 | 93.6% | 78.7% |
| 3zqsA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.61 | 46.0 | 5.05e-01 | 100.0% | 100.0% |
| 7ahfA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.59 | 52.0 | 4.78e-01 | 100.0% | 78.8% |
| 1qhlA00 | 3.40.1140.10 | Alpha Beta › 3-Layer(aba) Sandwich › N-terminal domain of mukB › | 0.58 | 44.0 | 3.65e-01 | 81.7% | 100.0% |
| 3wmyA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.57 | 48.0 | 3.60e-01 | 96.3% | 66.9% |
| 4agiA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.56 | 50.0 | 3.61e-01 | 99.1% | 94.3% |
| 8axiA01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.56 | 47.0 | 3.38e-01 | 95.4% | 80.9% |
| 2p4oA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.56 | 48.0 | 3.62e-01 | 98.2% | 93.8% |
| 1iucA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.55 | 48.0 | 3.56e-01 | 99.1% | 93.9% |
| 2w9jA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.55 | 27.0 | 3.24e-01 | 78.9% | 69.0% |
| 2xepB01 | 3.10.450.280 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 37.0 | 3.67e-01 | 70.6% | 98.2% |
| 2pm6D01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 46.0 | 3.54e-01 | 100.0% | 97.9% |
| 2bhoA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.52 | 45.0 | 4.58e-01 | 98.2% | 99.1% |
| 1omoA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.52 | 41.0 | 3.79e-01 | 88.1% | 73.8% |
| 2g30A02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.51 | 35.0 | 3.52e-01 | 85.3% | 67.2% |
| 3qv0A00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.51 | 43.0 | 3.68e-01 | 92.7% | 72.6% |
| 7wffb01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.50 | 43.0 | 3.15e-01 | 93.6% | 98.0% |
| 3dpuB03 | 3.30.310.200 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.50 | 33.0 | 3.40e-01 | 87.2% | 68.5% |
| 2wtzA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.50 | 42.0 | 3.35e-01 | 93.6% | 90.6% |
| 1jyaB00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.50 | 43.0 | 4.19e-01 | 96.3% | 95.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3906179 | 4099.1.1.9 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med27 | 0.68 | 61.0 | 5.46e-01 | 100.0% | 92.3% |
| 3479064 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.66 | 58.0 | 5.73e-01 | 97.2% | 99.1% |
| 3960877 | 295.1.1.27 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 | 0.65 | 40.0 | 4.80e-01 | 71.6% | 94.3% |
| 4929797 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.63 | 33.0 | 4.25e-01 | 82.6% | 91.5% |
| 3616330 | 77.3.1.4 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 | 0.62 | 34.0 | 3.22e-01 | 75.2% | 43.0% |
| 3226595 | 2484.1.1.162 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › F-box | 0.61 | 41.0 | 3.80e-01 | 78.9% | 51.7% |
| 3931696 | 241.4.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom | 0.60 | 49.0 | 4.97e-01 | 97.2% | 91.4% |
| 5059099 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.60 | 45.0 | 4.92e-01 | 96.3% | 100.0% |
| 4995784 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 37.0 | 4.35e-01 | 93.6% | 90.7% |
| 4020163 | 216.1.1.1 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con | 0.58 | 52.0 | 4.69e-01 | 100.0% | 74.7% |
| 3214007 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.56 | 39.0 | 3.80e-01 | 78.0% | 64.0% |
| 3934097 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.56 | 48.0 | 4.45e-01 | 97.2% | 74.3% |
| 3813621 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.55 | 43.0 | 4.60e-01 | 83.5% | 100.0% |
| 3229101 | 77.1.1.0 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein | 0.55 | 32.0 | 3.68e-01 | 75.2% | 82.2% |
| 3935038 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.55 | 34.0 | 3.91e-01 | 73.4% | 87.3% |
| 3266713 | 3264.1.1.0 ↗ | 0.54 | 43.0 | 3.85e-01 | 91.7% | 60.7% | |
| 5031724 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.53 | 36.0 | 3.92e-01 | 85.3% | 85.6% |
| 3743052 | 5.1.4.78 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta | 0.52 | 45.0 | 3.08e-01 | 100.0% | 74.0% |
| 3628265 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.52 | 45.0 | 3.11e-01 | 100.0% | 64.7% |
| 5016556 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 36.0 | 3.92e-01 | 91.7% | 85.6% |
| 3624850 | 331.9.1.9 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 | 0.51 | 35.0 | 3.56e-01 | 86.2% | 71.4% |
| 3624644 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 45.0 | 3.24e-01 | 99.1% | 87.2% |
| 1168794 | 330.1.1.8 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dsRBD | 0.51 | 31.0 | 3.28e-01 | 90.8% | 68.4% |
| 5072132 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.50 | 33.0 | 3.71e-01 | 97.2% | 88.7% |
D2
medium
residues 72-177_319-334
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4z32C02 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 28.0 | 3.04e-01 | 73.0% | 62.6% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3708219 | 331.23.1.4 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C | 0.59 | 28.0 | 3.57e-01 | 80.3% | 75.7% |
| 4658076 | 109.4.1.906 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › N-HEAT_ATR | 0.54 | 37.0 | 3.04e-01 | 70.5% | 70.2% |