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IMGVR_UViG_3300020477_001803-3300020477-Ga0211585_100181568
Arc-VirIMGVR_UViG_3300020477_001803-3300020477-Ga0211585_100181568
Identity
- Kingdom:
- archaea
Quality
83.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 321-446
Domain cluster:
rep: IMGVR_UViG_3300017910_001187-3300017910-Ga0192369_10652626__D362-481
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lpuA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.63 | 47.0 | 4.48e-01 | 78.6% | 88.5% |
| 5nl8A00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.58 | 51.0 | 4.49e-01 | 95.2% | 92.3% |
| 4ds2B00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.56 | 48.0 | 4.53e-01 | 94.4% | 90.4% |
| 1nrjA00 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.56 | 36.0 | 3.44e-01 | 88.1% | 55.1% |
| 1j7dA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.55 | 48.0 | 4.65e-01 | 94.4% | 88.6% |
| 1yf9A00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.55 | 48.0 | 4.44e-01 | 95.2% | 85.4% |
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.53 | 32.0 | 3.83e-01 | 94.4% | 94.8% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.53 | 37.0 | 3.37e-01 | 88.9% | 51.4% |
| 3zxjA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 43.0 | 3.25e-01 | 88.9% | 66.7% |
| 2bhoA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.51 | 40.0 | 4.23e-01 | 92.1% | 95.5% |
| 4htgA03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.51 | 32.0 | 3.74e-01 | 94.4% | 98.7% |
| 6n8pA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 41.0 | 2.94e-01 | 85.7% | 34.0% |
| 2hesX00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 42.0 | 3.20e-01 | 89.7% | 82.8% |
| 5hy7B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 42.0 | 2.93e-01 | 88.9% | 87.9% |
| 3rkxA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.50 | 40.0 | 3.45e-01 | 84.9% | 96.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 865437 | 241.1.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C | 0.62 | 47.0 | 4.46e-01 | 78.6% | 86.8% |
| 3712602 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.62 | 48.0 | 4.69e-01 | 89.7% | 74.8% |
| 3984933 | 252.2.1.5 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 | 0.57 | 31.0 | 3.54e-01 | 83.3% | 71.1% |
| 3931299 | 4099.1.1.20 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM6 | 0.57 | 46.0 | 4.52e-01 | 88.1% | 82.1% |
| 3248970 | 101.1.12.0 ↗ | alpha arrays › HTH › HTH › HTH motif inserted in other structures | 0.56 | 40.0 | 4.30e-01 | 74.6% | 99.1% |
| 3476559 | 5.1.13.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › Propeller domain of DCAF15 › DCAF15_WD40 | 0.55 | 43.0 | 3.13e-01 | 81.7% | 32.2% |
| 3588517 | 216.1.1.28 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Prok-E2_B | 0.54 | 44.0 | 4.54e-01 | 88.1% | 95.8% |
| 3185161 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.53 | 44.0 | 3.37e-01 | 91.3% | 82.6% |
| 3243400 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 39.0 | 3.29e-01 | 81.7% | 45.1% |
| 3587052 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.53 | 28.0 | 3.17e-01 | 80.2% | 66.3% |
| 3497120 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.53 | 32.0 | 3.62e-01 | 90.5% | 78.9% |
| 4120506 | 243.11.1.4 ↗ | a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › PF29632 | 0.52 | 30.0 | 3.69e-01 | 70.6% | 88.7% |
| 4889354 | 5.1.4.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N | 0.51 | 42.0 | 2.99e-01 | 88.9% | 35.1% |
| 3559756 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 41.0 | 3.11e-01 | 88.1% | 51.8% |
| 4020085 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 42.0 | 3.02e-01 | 91.3% | 94.9% |
| 3742766 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 43.0 | 3.19e-01 | 92.1% | 81.8% |
| 3843148 | 5.1.4.223 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd | 0.50 | 41.0 | 2.59e-01 | 89.7% | 40.0% |
D2
high
residues 463-589
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3r0aA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 39.0 | 4.00e-01 | 73.2% | 67.5% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4160852 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.52 | 33.0 | 3.24e-01 | 96.1% | 58.0% |
| 5011884 | 3563.1.1.1 ↗ | alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC | 0.52 | 34.0 | 2.70e-01 | 74.0% | 32.7% |
| 3686997 | 304.9.1.6 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 | 0.51 | 24.0 | 3.05e-01 | 100.0% | 77.1% |
| 4278285 | 5061.1.1.1 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY | 0.50 | 41.0 | 2.91e-01 | 91.3% | 94.7% |
D3
medium
residues 1-53
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qsaA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.60 | 41.0 | 3.38e-01 | 71.7% | 39.6% |
D4
medium
residues 69-141
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5wt7A00 | 2.30.180.10 | Mainly Beta › Roll › FAS1 domain › FAS1 domain | 0.55 | 38.0 | 3.10e-01 | 89.0% | 37.9% |
| 7asgA01 | 2.30.180.10 | Mainly Beta › Roll › FAS1 domain › FAS1 domain | 0.54 | 37.0 | 3.11e-01 | 89.0% | 39.1% |
| 1nyoA00 | 2.30.180.10 | Mainly Beta › Roll › FAS1 domain › FAS1 domain | 0.53 | 35.0 | 2.78e-01 | 90.4% | 30.1% |
| 4ianA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.53 | 43.0 | 3.12e-01 | 94.5% | 90.2% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.52 | 38.0 | 3.55e-01 | 79.5% | 83.2% |
| 6w9rB01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.52 | 40.0 | 3.23e-01 | 86.3% | 71.1% |
| 2w9mA04 | 3.30.210.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain | 0.52 | 36.0 | 3.94e-01 | 75.3% | 96.4% |
| 4cclA02 | 3.40.366.30 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 | 0.51 | 31.0 | 2.47e-01 | 75.3% | 25.6% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3792116 | 3831.1.1.5 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › WSD | 0.60 | 43.0 | 3.23e-01 | 75.3% | 38.3% |
| 3886774 | 633.23.1.1 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin | 0.58 | 40.0 | 3.04e-01 | 72.6% | 74.7% |
| 4214410 | 73.1.1.0 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain | 0.54 | 39.0 | 3.91e-01 | 76.7% | 90.7% |
| 5071832 | 102.1.2.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase | 0.51 | 42.0 | 3.10e-01 | 93.2% | 85.2% |
| 3583571 | 833.1.1.0 ↗ | a+b duplicates or obligate multimers › Pepsin inhibitor-3 › Pepsin inhibitor-3 › Pepsin inhibitor-3 | 0.51 | 43.0 | 3.85e-01 | 97.3% | 92.5% |
| 4936812 | 2484.1.1.49 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N | 0.50 | 42.0 | 3.60e-01 | 97.3% | 99.2% |
D5
medium
residues 142-320
Domain cluster:
representative
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5047816 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 23.0 | 2.64e-01 | 82.1% | 52.6% |
| 4484763 | 2490.2.1.1 ↗ | a/b three-layered sandwiches › Ribosomal protein L13/L15p/L18e/L32e › Ribosomal protein L13 and L16-A › Ribosomal protein L13 and L16-A › Ribosomal_L13 | 0.51 | 29.0 | 3.32e-01 | 84.9% | 73.8% |