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IMGVR_UViG_3300020814_000341-3300020814-Ga0214088_182449114

Arc-Vir

IMGVR_UViG_3300020814_000341-3300020814-Ga0214088_182449114

Identity

Kingdom:
archaea

Quality

59.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-76
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.69 54.0 4.69e-01 93.1% 54.5%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 42.0 4.13e-01 76.4% 61.5%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 4.81e-01 93.1% 79.6%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 5.11e-01 93.1% 92.6%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 46.0 4.86e-01 90.3% 93.3%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.80e-01 91.7% 78.8%
2cqnA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.60 48.0 4.71e-01 97.2% 81.8%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 4.90e-01 98.6% 82.6%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.59 50.0 4.66e-01 98.6% 74.5%
1l3pA00 1.20.120.320 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Group V grass pollen allergen 0.55 44.0 4.05e-01 94.4% 72.5%
1l7vA00 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.54 45.0 2.96e-01 94.4% 64.4%
2ncoA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 42.0 3.86e-01 93.1% 63.7%
3ppbA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 46.0 3.45e-01 100.0% 83.0%
4eekA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 37.0 3.85e-01 91.7% 81.8%
2lh9A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.51 41.0 4.02e-01 91.7% 91.0%
3k9dA02 3.40.309.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 0.50 41.0 3.14e-01 93.1% 48.1%
1t6jA03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.50 41.0 3.75e-01 97.2% 89.3%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3178452 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.88 59.0 6.21e-01 76.4% 76.9%
3940696 101.1.1.103 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 0.83 54.0 6.23e-01 83.3% 96.0%
3925094 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 57.0 6.43e-01 83.3% 96.4%
3925766 101.1.1.103 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 0.80 57.0 5.63e-01 83.3% 70.7%
3991207 101.1.1.400 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain, PAX 0.77 55.0 4.11e-01 79.2% 31.8%
4571183 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 66.0 5.75e-01 98.6% 94.3%
3715143 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 53.0 5.15e-01 87.5% 71.2%
4967694 101.1.1.552 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF5806 0.69 52.0 5.16e-01 80.6% 80.0%
3416242 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.69 53.0 4.87e-01 80.6% 74.4%
4564047 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 55.0 5.10e-01 93.1% 96.8%
3512685 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.66 56.0 4.58e-01 97.2% 63.3%
5027506 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 57.0 5.44e-01 98.6% 92.9%
3711217 101.7.1.0 ↗ alpha arrays › HTH › DEK-C › DEK-C 0.64 48.0 4.96e-01 87.5% 90.8%
3685188 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.64 52.0 3.99e-01 93.1% 53.6%
3708809 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 47.0 4.86e-01 86.1% 89.2%
3548337 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 54.0 4.85e-01 98.6% 85.7%
3392763 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 5.03e-01 97.2% 90.6%
3784216 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 53.0 4.57e-01 100.0% 95.8%
3659049 101.28.1.0 ↗ alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins 0.61 44.0 4.64e-01 87.5% 95.0%
3856438 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.61 51.0 3.16e-01 100.0% 62.2%
5047364 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 51.0 4.47e-01 94.4% 66.4%
3720602 101.1.2.359 ↗ alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD 0.60 49.0 4.82e-01 93.1% 83.7%
4964669 2484.1.1.341 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Salactin 0.59 42.0 3.13e-01 75.0% 56.3%
5049306 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 48.0 4.21e-01 93.1% 60.9%
4442036 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.59 41.0 3.74e-01 73.6% 69.0%
3548611 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.58 41.0 3.11e-01 84.7% 31.2%
3670484 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.58 41.0 3.47e-01 84.7% 43.9%
4218568 101.1.1.463 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF31175 0.57 47.0 4.94e-01 93.1% 100.0%
4957980 2484.1.1.341 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Salactin 0.56 40.0 3.01e-01 75.0% 66.1%
4032438 162.1.1.1 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.56 44.0 3.98e-01 87.5% 96.0%
4429011 5065.1.1.3 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.55 44.0 2.98e-01 94.4% 67.6%
3402387 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.55 38.0 3.45e-01 83.3% 53.0%
4026046 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 46.0 3.89e-01 94.4% 59.2%
3845015 108.1.1.30 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_8 0.54 42.0 3.84e-01 87.5% 72.0%
3217642 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.52 37.0 3.58e-01 83.3% 66.3%
4245968 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 41.0 3.87e-01 87.5% 80.0%
2501134 2484.1.1.87 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MreB-like_C 0.52 37.0 2.92e-01 77.8% 59.5%
3580917 109.27.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.51 45.0 4.26e-01 98.6% 83.5%
D2 high residues 91-178
PDB