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IMGVR_UViG_3300020814_000341-3300020814-Ga0214088_182449121

Arc-Vir

IMGVR_UViG_3300020814_000341-3300020814-Ga0214088_182449121

Identity

Kingdom:
archaea

Quality

90.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-91
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4iq0C02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 46.0 3.33e-01 84.7% 50.3%
1pbyB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 42.0 2.72e-01 81.4% 34.4%
4hwtA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 44.0 3.71e-01 88.1% 72.7%
4pk9A00 3.40.1090.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain 0.56 44.0 2.78e-01 89.8% 51.8%
8c0zE01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 41.0 3.21e-01 79.7% 95.4%
1ye8A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 41.0 3.01e-01 83.1% 43.9%
1xf1A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.52e-01 83.1% 88.1%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 41.0 3.28e-01 81.4% 98.3%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 3.63e-01 83.1% 90.0%
1plsA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 37.0 3.09e-01 76.3% 66.4%
3ktzA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.53 36.0 3.35e-01 74.6% 84.3%
6cmzA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 41.0 3.37e-01 88.1% 89.9%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 2.97e-01 78.0% 63.6%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 35.0 3.37e-01 71.2% 88.7%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.52 41.0 3.69e-01 91.5% 92.1%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.52 43.0 3.06e-01 98.3% 51.5%
4ntcA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 38.0 3.04e-01 79.7% 99.2%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.73e-01 81.4% 93.5%
3lv0A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.51 42.0 3.23e-01 93.2% 86.3%
1r9cA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 34.0 2.77e-01 81.4% 33.6%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.50 35.0 3.72e-01 74.6% 95.8%
5nahA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 37.0 2.34e-01 81.4% 40.9%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3768026 109.4.1.3452 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Beta-prop_ELP1_2nd 0.67 56.0 3.75e-01 100.0% 43.3%
3416070 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 50.0 3.06e-01 81.4% 45.1%
2087183 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 51.0 3.52e-01 86.4% 71.8%
3399971 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 51.0 3.15e-01 93.2% 29.0%
3992587 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 51.0 2.99e-01 93.2% 24.7%
4848559 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 48.0 3.36e-01 86.4% 90.9%
3995515 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 49.0 3.14e-01 89.8% 41.2%
4399722 1013.1.1.2 ↗ beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD40 0.61 50.0 2.98e-01 93.2% 24.5%
3994170 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 46.0 3.27e-01 86.4% 51.8%
5056976 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 43.0 3.65e-01 76.3% 58.0%
4888957 5.1.4.340 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Sof1, Beta-prop_NUP159_NUP214 0.60 49.0 3.22e-01 94.9% 38.5%
3503638 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.60 49.0 3.52e-01 93.2% 59.3%
3715297 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.60 47.0 4.01e-01 86.4% 96.8%
3914367 5.1.2.44 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Beta-prop_HPS5 0.59 46.0 3.51e-01 86.4% 75.7%
4854210 5.1.4.172 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_CAF1B_HIR1 0.59 46.0 3.99e-01 86.4% 87.4%
None — 0.59 51.0 3.17e-01 100.0% 34.4%
3506771 5.1.5.75 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.57 49.0 3.12e-01 98.3% 34.9%
3774120 4320.1.1.1 ↗ alpha superhelices › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › TFIID_NTD2 0.57 44.0 3.00e-01 86.4% 91.3%
3177048 719.2.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.57 46.0 3.91e-01 88.1% 92.6%
3260374 220.1.1.43 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.56 39.0 3.41e-01 72.9% 92.5%
5070281 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 47.0 3.10e-01 98.3% 41.8%
3518786 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.56 44.0 3.65e-01 88.1% 47.6%
3247824 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 39.0 3.27e-01 76.3% 71.4%
3259156 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.55 40.0 3.16e-01 79.7% 99.2%
3263018 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 39.0 3.31e-01 76.3% 77.0%
4891011 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 42.0 2.93e-01 86.4% 26.3%
2664854 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.54 37.0 3.16e-01 71.2% 59.8%
3959289 2003.1.2.69 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8, Pyr_redox_3 0.53 36.0 2.59e-01 94.9% 22.6%
3700076 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.53 44.0 2.64e-01 93.2% 94.2%
3362676 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.52 39.0 3.04e-01 83.1% 92.1%
4161673 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.51 38.0 3.49e-01 86.4% 69.4%