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IMGVR_UViG_3300021182_000246-3300021182-Ga0215010_100071257
Arc-VirIMGVR_UViG_3300021182_000246-3300021182-Ga0215010_100071257
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-45
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22763.2 best | NrS1-1_pol-like_HBD | 45.0 | 1.10e-11 | 97.8% | 54.7% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wz2A05 | 1.10.10.720 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › leucyl-tRNA synthetase | 0.75 | 62.0 | 5.97e-01 | 100.0% | 84.6% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 52.0 | 4.56e-01 | 100.0% | 69.5% |
| 1ci4A00 | 1.10.150.40 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF | 0.64 | 52.0 | 4.39e-01 | 100.0% | 76.1% |
| 3rq4A01 | 1.10.10.1700 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Histone-lysine N-methyltransferase | 0.64 | 51.0 | 4.19e-01 | 100.0% | 83.7% |
| 3r0vA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 44.0 | 2.89e-01 | 100.0% | 31.5% |
| 2g2dA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.52 | 37.0 | 2.67e-01 | 88.9% | 22.5% |
| 5z42A00 | 3.30.1540.20 | Alpha Beta › 2-Layer Sandwich › formyl-coa transferase, domain 3 › MutL, C-terminal domain, dimerisation subdomain | 0.52 | 41.0 | 3.23e-01 | 93.3% | 52.0% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 36.0 | 3.37e-01 | 73.3% | 91.4% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5051282 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.79 | 69.0 | 6.32e-01 | 100.0% | 75.0% |
| 3411823 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.78 | 65.0 | 5.42e-01 | 100.0% | 63.5% |
| 3724219 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.63 | 51.0 | 4.28e-01 | 100.0% | 57.8% |
D2
high
residues 584-661
D3
medium
residues 63-83_329-504
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zkzC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 31.0 | 4.91e-01 | 71.6% | 90.8% |
| 4hqeA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 32.0 | 4.51e-01 | 70.6% | 78.1% |
| 1r1uB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 31.0 | 4.63e-01 | 71.6% | 84.9% |
| 3pqkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 32.0 | 4.57e-01 | 73.6% | 81.8% |
| 1zarA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 30.0 | 4.62e-01 | 70.6% | 86.5% |
| 3cuqA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 30.0 | 4.79e-01 | 73.6% | 95.0% |
| 3gw2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 29.0 | 4.40e-01 | 71.6% | 81.7% |
| 3f6oB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 29.0 | 4.35e-01 | 71.1% | 81.3% |
| 3cuoD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 32.0 | 4.70e-01 | 75.1% | 89.4% |
| 7dvrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 30.0 | 3.60e-01 | 70.1% | 56.7% |
| 6uvuA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 31.0 | 4.29e-01 | 75.6% | 80.8% |
| 1ulyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 30.0 | 4.54e-01 | 83.8% | 93.3% |
| 6j0eB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 35.0 | 4.52e-01 | 79.2% | 83.8% |
| 4g6qA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 31.0 | 4.72e-01 | 85.3% | 100.0% |
| 2p4wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 34.0 | 4.72e-01 | 73.1% | 97.1% |
| 2v79A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 32.0 | 4.09e-01 | 85.8% | 83.5% |
| 2e9fB01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.61 | 27.0 | 3.74e-01 | 85.3% | 83.3% |
| 2khdA00 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 24.0 | 3.19e-01 | 90.4% | 72.2% |
| 5w2fA01 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.51 | 22.0 | 3.27e-01 | 85.8% | 91.9% |
| 1vdhA01 | 3.30.70.1030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 | 0.50 | 23.0 | 2.88e-01 | 88.8% | 67.8% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5045722 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.82 | 31.0 | 5.42e-01 | 70.6% | 98.7% |
| 3602589 | 101.1.2.150 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_45 | 0.81 | 32.0 | 4.60e-01 | 70.6% | 75.0% |
| 4993666 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.81 | 33.0 | 4.37e-01 | 83.2% | 67.8% |
| 5016950 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.80 | 32.0 | 4.89e-01 | 70.6% | 84.4% |
| 5061514 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.79 | 32.0 | 3.35e-01 | 70.6% | 41.6% |
| 4979815 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.79 | 33.0 | 5.10e-01 | 71.1% | 90.0% |
| 4947948 | 101.1.2.876 ↗ | alpha arrays › HTH › HTH › winged helix domain › tRNA-synt_2d | 0.78 | 31.0 | 4.84e-01 | 70.1% | 88.2% |
| 4941287 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.76 | 34.0 | 5.13e-01 | 84.3% | 95.6% |
| 4973869 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 30.0 | 4.52e-01 | 70.6% | 84.4% |
| 4930596 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.73 | 35.0 | 3.84e-01 | 85.3% | 54.7% |
| 5017942 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.72 | 32.0 | 4.53e-01 | 72.1% | 84.0% |
| 4980261 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 33.0 | 4.57e-01 | 71.6% | 83.8% |
| 4964954 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.71 | 34.0 | 4.25e-01 | 74.6% | 71.1% |
| 4645846 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.71 | 31.0 | 3.41e-01 | 70.1% | 48.8% |
| 4466102 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.71 | 31.0 | 3.41e-01 | 70.1% | 48.8% |
| 5048236 | 314.1.1.3 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d | 0.70 | 29.0 | 2.33e-01 | 70.6% | 20.8% |
| 5039984 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.70 | 35.0 | 3.81e-01 | 87.3% | 57.0% |
| 5041543 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.69 | 34.0 | 4.11e-01 | 86.8% | 68.6% |
| 3977793 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 31.0 | 4.52e-01 | 71.6% | 92.6% |
| 4927759 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.65 | 34.0 | 3.80e-01 | 73.6% | 63.1% |
| 4998031 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.62 | 33.0 | 3.50e-01 | 74.6% | 58.4% |
| 3602531 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.61 | 32.0 | 4.40e-01 | 72.6% | 95.5% |
| 5025804 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.60 | 31.0 | 3.70e-01 | 72.6% | 71.4% |
| 3468223 | 101.1.2.90 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_9 | 0.57 | 46.0 | 3.76e-01 | 82.7% | 69.3% |
| 3306699 | 101.1.2.517 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.55 | 43.0 | 3.46e-01 | 81.2% | 84.3% |
| 4011031 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.52 | 30.0 | 3.55e-01 | 76.6% | 80.0% |
D4
medium
residues 84-181_266-328
Domain cluster:
rep: IMGVR_UViG_3300000510_000431-3300000510-Foulum_10041203__D331-409_502-568
D5
medium
residues 182-265
Domain cluster:
rep: MH155870.1__AWN05310.1__SEA_IBANTIK_88__00086__D97-184