←Back to structures
IMGVR_UViG_3300021255_003917-3300021255-Ga0223825_113194048
Arc-VirIMGVR_UViG_3300021255_003917-3300021255-Ga0223825_113194048
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-156
Domain cluster:
rep: IMGVR_UViG_3300002123_000235-3300002123-C687J26634_1000017526__D5-94_129-160
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ajiB03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 38.0 | 4.75e-01 | 89.6% | 85.3% |
| 2mq8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.70 | 40.0 | 4.64e-01 | 92.9% | 76.8% |
| 3encA00 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.69 | 34.0 | 4.63e-01 | 87.7% | 92.4% |
| 6hciB00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 30.0 | 3.65e-01 | 95.5% | 66.7% |
| 2g0cA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.64 | 28.0 | 3.98e-01 | 89.6% | 89.7% |
| 2r4fA03 | 3.30.70.420 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain | 0.62 | 38.0 | 4.22e-01 | 92.9% | 77.8% |
| 5ao2B02 | 3.30.70.2760 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 35.0 | 4.34e-01 | 90.3% | 95.5% |
| 2dq0A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.61 | 37.0 | 4.39e-01 | 89.0% | 87.9% |
| 1r89A03 | 3.30.70.590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain | 0.61 | 38.0 | 4.07e-01 | 93.5% | 71.6% |
| 5jxsA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.59 | 33.0 | 3.44e-01 | 92.2% | 56.3% |
| 2yvsA02 | 3.30.70.2560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 24.0 | 3.52e-01 | 85.1% | 89.8% |
| 8egxA04 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.56 | 32.0 | 3.83e-01 | 95.5% | 83.2% |
| 1uqwA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.56 | 34.0 | 3.49e-01 | 90.9% | 61.7% |
| 1yirA00 | 3.20.140.10 | Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase | 0.55 | 38.0 | 2.79e-01 | 93.5% | 27.2% |
| 2d5wA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.51 | 31.0 | 3.48e-01 | 89.0% | 78.6% |
| 7oo1A01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.50 | 24.0 | 3.30e-01 | 87.7% | 89.6% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5035757 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.71 | 35.0 | 4.16e-01 | 92.2% | 68.6% |
| 4034610 | 304.31.1.2 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › Wzz | 0.67 | 47.0 | 5.09e-01 | 92.2% | 86.4% |
| 3172535 | 304.9.1.126 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF29325 | 0.67 | 39.0 | 4.69e-01 | 94.2% | 87.0% |
| 3407163 | 304.48.1.6 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A | 0.67 | 42.0 | 4.70e-01 | 92.9% | 79.8% |
| 5018198 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.65 | 40.0 | 3.54e-01 | 90.3% | 42.3% |
| 4947537 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.60 | 42.0 | 3.77e-01 | 97.4% | 50.5% |
| 3699443 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.60 | 40.0 | 4.64e-01 | 89.6% | 92.2% |
| 4873671 | 304.136.1.1 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SBP_bac_5 | 0.57 | 34.0 | 3.97e-01 | 89.0% | 83.7% |
| 3937461 | 304.151.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | 0.57 | 34.0 | 3.97e-01 | 94.8% | 82.7% |
| 3591695 | 375.1.1.207 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › FAZ1_cons | 0.57 | 34.0 | 4.12e-01 | 90.3% | 97.8% |
| 3782130 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.57 | 28.0 | 3.55e-01 | 90.3% | 80.0% |
| 3271493 | 304.121.1.0 ↗ | a+b two layers › Alpha-beta plaits › SP0830-like › SP0830-like | 0.57 | 27.0 | 3.49e-01 | 87.7% | 78.8% |
| 5017844 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.57 | 42.0 | 4.67e-01 | 97.4% | 97.5% |
| 3597457 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 35.0 | 4.27e-01 | 100.0% | 100.0% |
| 3228178 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.55 | 42.0 | 3.38e-01 | 79.9% | 55.3% |
| 3722375 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.53 | 33.0 | 3.81e-01 | 90.3% | 86.4% |
| 51280 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.51 | 35.0 | 3.50e-01 | 70.1% | 73.8% |