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IMGVR_UViG_3300021255_003917-3300021255-Ga0223825_113194049

Arc-Vir

IMGVR_UViG_3300021255_003917-3300021255-Ga0223825_113194049

Quality

84.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-144
PDB
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.79 70.0 7.19e-01 92.7% 96.9%
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.78 66.0 6.88e-01 92.7% 95.3%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.76 71.0 6.08e-01 100.0% 82.9%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.74 66.0 6.68e-01 96.4% 98.5%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.73 49.0 5.65e-01 94.2% 94.9%
5xoyB02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 42.0 4.67e-01 77.4% 72.0%
4q7aC02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 41.0 4.61e-01 86.1% 72.2%
1cg2A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 43.0 4.77e-01 78.8% 75.5%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.70 50.0 5.45e-01 94.2% 89.4%
3ct9A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 40.0 4.45e-01 78.1% 71.0%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 44.0 4.81e-01 83.9% 76.3%
2l25A00 3.30.2000.20 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.69 61.0 6.07e-01 94.2% 94.3%
3d85D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 39.0 4.38e-01 82.5% 72.6%
3gb0A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 42.0 4.61e-01 83.9% 75.9%
5uejA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 43.0 4.73e-01 83.9% 77.2%
3io1A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 43.0 4.61e-01 84.7% 75.9%
2rb7A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 40.0 4.44e-01 83.9% 75.7%
6vh5C03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 36.0 4.24e-01 85.4% 80.9%
2f7vA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 41.0 4.52e-01 83.9% 81.5%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 36.0 4.28e-01 79.6% 83.3%
4ewtA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 41.0 4.44e-01 79.6% 77.4%
3pfoA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 45.0 4.70e-01 86.1% 79.7%
3i7fB02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.62 54.0 4.04e-01 94.2% 81.4%
2v8hA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 40.0 4.34e-01 83.9% 76.7%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 40.0 4.35e-01 83.2% 77.4%
2je8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 39.0 4.27e-01 86.9% 78.2%
1lp9E02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 32.0 4.01e-01 70.1% 83.7%
6ue9L02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 38.0 4.05e-01 83.2% 68.9%
3tx8A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 40.0 4.31e-01 78.8% 78.1%
4e98C00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 40.0 4.47e-01 86.1% 86.7%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 39.0 4.36e-01 85.4% 84.9%
5wy8B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 38.0 4.12e-01 80.3% 77.7%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 34.0 4.06e-01 84.7% 86.5%
1usyC00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.59 50.0 4.01e-01 92.7% 99.6%
3qw9B00 2.60.40.4100 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-C domain 0.58 45.0 4.21e-01 83.9% 66.9%
3g2fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 32.0 3.93e-01 92.7% 87.4%
5z1aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 36.0 3.89e-01 86.9% 75.4%
8eisA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.55 44.0 3.91e-01 86.9% 58.0%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.54 35.0 3.31e-01 99.3% 54.6%
2bj0A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.54 46.0 4.07e-01 93.4% 83.3%
3bzmA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.54 47.0 3.26e-01 92.7% 54.5%
2w8eA00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.54 46.0 4.04e-01 92.7% 81.8%
3igqC00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.53 45.0 4.11e-01 90.5% 89.1%
6d6tA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.53 45.0 3.95e-01 92.7% 81.4%
3rqwA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.53 45.0 4.07e-01 92.7% 93.7%
6dw1A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.53 45.0 3.93e-01 92.7% 82.4%
2c5dC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 4.32e-01 81.8% 100.0%
5tseA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.52 34.0 3.43e-01 96.4% 66.2%
2yqzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 35.0 3.13e-01 70.8% 94.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957584 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.84 66.0 7.23e-01 92.7% 96.5%
4928893 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.81 72.0 7.09e-01 93.4% 95.2%
5083619 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.81 72.0 7.09e-01 93.4% 95.1%
5040945 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.79 72.0 6.99e-01 96.4% 94.7%
2642577 304.124.1.3 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF3168 0.79 70.0 7.08e-01 93.4% 94.8%
3964886 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.79 68.0 6.83e-01 91.2% 96.4%
3585212 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.77 72.0 6.05e-01 98.5% 91.6%
364035 304.124.1.1 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_U 0.74 65.0 6.59e-01 93.4% 97.7%
3589403 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.73 59.0 6.25e-01 90.5% 95.8%
4034134 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.73 62.0 6.43e-01 91.2% 98.4%
197096 310.3.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilO 0.73 49.0 4.99e-01 94.2% 69.6%
4986421 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.73 41.0 4.61e-01 84.7% 71.4%
5078308 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.72 64.0 6.49e-01 93.4% 95.6%
4453871 304.18.1.1 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.72 41.0 4.85e-01 73.7% 81.1%
4261744 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.72 60.0 6.29e-01 92.7% 97.6%
4562028 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.71 52.0 5.14e-01 94.2% 71.0%
None 0.71 48.0 5.44e-01 93.4% 93.0%
140398 304.124.1.4 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF4128 0.69 61.0 6.07e-01 94.2% 94.3%
3970088 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.66 37.0 4.30e-01 78.8% 76.8%
3606930 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.66 49.0 5.42e-01 92.7% 99.1%
3943477 310.3.1.9 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › P2_Phage_GpR 0.65 55.0 5.66e-01 97.1% 94.6%
5026741 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.64 43.0 4.55e-01 84.7% 76.7%
4944050 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.64 40.0 4.41e-01 77.4% 77.3%
3689744 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.63 46.0 3.12e-01 74.5% 47.4%
4935045 11.1.1.51 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.63 42.0 4.19e-01 89.1% 65.0%
3742193 314.1.1.9 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.62 54.0 3.96e-01 92.7% 88.0%
3496210 11.12.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like 0.62 46.0 4.13e-01 86.1% 56.8%
3689305 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 41.0 4.33e-01 86.9% 75.2%
5030841 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 37.0 4.25e-01 83.2% 84.0%
3733238 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.60 43.0 4.46e-01 77.4% 80.0%
5023975 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.60 46.0 4.88e-01 92.0% 88.8%
3384696 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.59 52.0 4.79e-01 94.9% 91.3%
3394266 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.58 39.0 4.18e-01 83.9% 79.2%
3644486 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.58 51.0 4.69e-01 94.9% 90.3%
3327314 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 51.0 3.40e-01 94.9% 30.2%
4008941 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.58 43.0 4.39e-01 84.7% 80.8%
3569001 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.57 46.0 4.15e-01 90.5% 61.6%
3502450 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.57 41.0 4.21e-01 83.2% 77.7%
4929211 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 39.0 3.92e-01 87.6% 68.6%
4183692 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.57 48.0 4.47e-01 92.0% 90.9%
3233697 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.57 47.0 4.04e-01 92.0% 84.3%
5019198 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.57 44.0 4.77e-01 89.8% 97.4%
5034688 11.1.1.51 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.57 37.0 3.63e-01 85.4% 61.4%
4997220 304.102.1.2 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD 0.56 47.0 3.98e-01 89.1% 91.1%
3275804 11.1.5.62 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM49 0.56 42.0 4.49e-01 83.2% 89.2%
3317574 11.1.1.51 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.55 38.0 3.69e-01 73.0% 62.7%
1407174 4142.1.1.2 a+b two layers › YehR-like › YehR-like › YehR-like › SP_0191-like 0.55 41.0 4.12e-01 78.8% 81.4%
4950751 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.55 41.0 4.10e-01 83.9% 76.4%
3643481 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 41.0 3.04e-01 81.0% 41.6%
3732434 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.54 43.0 4.21e-01 83.9% 81.4%
4979585 2003.1.5.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 0.53 39.0 3.10e-01 76.6% 74.6%
3242509 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.53 40.0 4.03e-01 86.1% 79.3%
3728826 246.3.1.4 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.52 42.0 2.97e-01 92.0% 30.1%
4999860 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.52 46.0 4.35e-01 96.4% 96.2%
3701022 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 31.0 3.22e-01 97.1% 64.0%
4928967 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.83e-01 83.9% 75.5%
4340137 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 40.0 3.03e-01 81.0% 45.2%
3646028 246.3.1.4 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.50 36.0 2.75e-01 74.5% 68.4%
4081561 304.8.1.50 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Rep_1 0.50 42.0 3.72e-01 97.1% 60.5%