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IMGVR_UViG_3300021256_004082-3300021256-Ga0223826_1000019029

Arc-Vir

IMGVR_UViG_3300021256_004082-3300021256-Ga0223826_1000019029

Quality

87.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-87
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.73 55.0 4.19e-01 80.0% 81.5%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.70 60.0 4.49e-01 96.7% 51.3%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 52.0 4.11e-01 83.3% 69.0%
4ep4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.67 54.0 4.02e-01 91.7% 59.0%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 49.0 3.78e-01 100.0% 37.2%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.62 44.0 3.31e-01 75.0% 54.5%
2fauA02 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 42.0 3.22e-01 71.7% 54.7%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 48.0 4.24e-01 96.7% 66.3%
1nbwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 47.0 3.72e-01 91.7% 64.4%
1vavA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 49.0 3.39e-01 100.0% 47.7%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 48.0 3.52e-01 96.7% 59.4%
2jtyA00 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.57 38.0 2.78e-01 70.0% 59.8%
3c7fA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 45.0 2.91e-01 100.0% 42.9%
3cqnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 45.0 3.47e-01 100.0% 71.4%
5uj1A03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.55 37.0 2.70e-01 71.7% 83.0%
1gsaA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 46.0 3.72e-01 100.0% 73.4%
7tuvA02 2.40.50.700 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 42.0 3.84e-01 90.0% 100.0%
2i71A01 3.40.50.10640 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like 0.53 42.0 2.91e-01 86.7% 87.9%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.53 36.0 3.12e-01 73.3% 43.3%
2jdcA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 40.0 2.99e-01 80.0% 65.5%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.53 34.0 2.64e-01 71.7% 26.7%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 3.47e-01 91.7% 82.0%
3w42A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 42.0 3.07e-01 96.7% 76.9%
6rupA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 3.40e-01 90.0% 88.3%
6qj2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 2.70e-01 93.3% 36.5%
4wrnA02 2.60.40.3210 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-N domain 0.51 41.0 3.39e-01 86.7% 88.6%
2gx8A02 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 37.0 3.25e-01 78.3% 78.8%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.51 39.0 3.30e-01 95.0% 62.2%
4glaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 43.0 3.81e-01 96.7% 87.6%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.50 38.0 2.94e-01 86.7% 72.2%
2vg9A00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.50 41.0 2.87e-01 95.0% 67.3%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3649488 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.76 57.0 4.15e-01 80.0% 81.9%
3473771 11.2.1.8 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.72 53.0 4.01e-01 80.0% 80.0%
3614253 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.69 62.0 3.78e-01 100.0% 27.5%
3585374 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 59.0 4.61e-01 96.7% 49.2%
3606640 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 49.0 4.07e-01 78.3% 46.4%
3421076 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.68 60.0 3.78e-01 100.0% 30.2%
3712198 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.67 59.0 3.55e-01 100.0% 41.6%
4642198 7502.1.1.2 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.66 46.0 3.07e-01 73.3% 19.2%
3727689 2008.1.1.143 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 0.66 55.0 3.73e-01 98.3% 25.3%
None 0.65 55.0 3.28e-01 96.7% 24.5%
4995609 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 57.0 4.34e-01 100.0% 93.1%
4974772 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 52.0 3.71e-01 91.7% 46.2%
5051305 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 44.0 3.48e-01 85.0% 34.4%
4351646 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.63 45.0 3.25e-01 76.7% 30.8%
3787279 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.63 51.0 3.37e-01 93.3% 33.9%
5025916 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 55.0 4.20e-01 100.0% 89.7%
4029391 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.62 43.0 3.23e-01 73.3% 32.3%
5027780 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.62 43.0 4.34e-01 88.3% 73.3%
4644110 11.1.1.1197 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3281 0.62 46.0 3.68e-01 81.7% 88.8%
5050618 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 45.0 3.55e-01 83.3% 35.0%
3919600 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 54.0 3.26e-01 100.0% 23.9%
3581025 376.1.2.15 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › SOS1_NGEF_PH 0.61 51.0 3.83e-01 100.0% 36.3%
3781730 5.1.11.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Utp8_b_propeller 0.60 46.0 2.93e-01 88.3% 33.5%
4640212 10.1.1.117 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin 0.60 54.0 3.43e-01 100.0% 45.0%
3607858 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 50.0 4.33e-01 100.0% 65.7%
3618518 109.21.1.1 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleopor_Nup85 0.59 50.0 2.90e-01 95.0% 58.4%
4219295 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.59 49.0 3.87e-01 95.0% 58.5%
4200618 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.58 49.0 4.04e-01 96.7% 73.0%
3476559 5.1.13.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › Propeller domain of DCAF15 › DCAF15_WD40 0.58 51.0 3.19e-01 100.0% 76.5%
3232476 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.58 42.0 3.58e-01 90.0% 47.0%
3470080 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.58 45.0 4.20e-01 90.0% 69.6%
4098000 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.58 50.0 3.99e-01 96.7% 61.7%
3849982 109.6.1.2 alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N 0.57 42.0 2.49e-01 100.0% 9.9%
3451695 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 40.0 3.61e-01 83.3% 51.1%
4259228 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.57 47.0 3.94e-01 96.7% 69.1%
4636438 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.57 49.0 4.00e-01 100.0% 69.2%
3751112 223.2.1.29 a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 0.56 41.0 3.18e-01 83.3% 32.7%
3589882 4325.1.1.7 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 0.56 39.0 4.14e-01 83.3% 86.0%
4218926 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.56 45.0 3.76e-01 96.7% 70.8%
3712071 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.56 40.0 2.59e-01 76.7% 32.5%
3696734 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.56 49.0 3.28e-01 100.0% 49.0%
3509197 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 42.0 3.85e-01 90.0% 61.2%
3520574 5.1.2.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DPPIV_N 0.55 37.0 2.61e-01 70.0% 38.7%
5052265 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.55 43.0 3.34e-01 83.3% 93.6%
4059480 881.1.1.37 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF27270 0.55 44.0 3.18e-01 90.0% 30.9%
3209928 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 47.0 2.78e-01 100.0% 35.1%
3500665 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 40.0 3.47e-01 90.0% 50.5%
3945393 7089.1.1.2 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF5405 0.54 45.0 4.19e-01 98.3% 76.2%
2813167 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.54 45.0 3.08e-01 90.0% 92.5%
4397552 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.54 44.0 3.65e-01 100.0% 66.4%
None 0.54 40.0 3.24e-01 88.3% 39.2%
3454355 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.53 45.0 2.90e-01 96.7% 29.9%
5065450 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 38.0 2.97e-01 83.3% 31.0%
5046724 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.53 43.0 3.66e-01 98.3% 65.2%
5037096 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 43.0 3.09e-01 100.0% 39.1%
3525336 5.1.3.130 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HPS3_N 0.52 42.0 2.97e-01 93.3% 58.1%
3899230 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 37.0 3.31e-01 85.0% 48.0%
3413401 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 40.0 2.48e-01 93.3% 21.0%
4010765 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.52 44.0 3.57e-01 100.0% 61.6%
3761138 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 38.0 3.22e-01 85.0% 43.5%
3545249 220.1.1.12 beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.52 43.0 3.08e-01 100.0% 61.4%
3513530 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 37.0 3.03e-01 85.0% 36.9%
5003854 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.51 40.0 3.47e-01 96.7% 64.3%
3648159 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 38.0 3.13e-01 90.0% 40.0%
3787933 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.51 42.0 3.11e-01 91.7% 40.6%
3475901 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 38.0 3.46e-01 90.0% 57.8%
3297150 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 43.0 3.66e-01 95.0% 58.0%
4986251 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.51 43.0 3.79e-01 95.0% 92.2%
3334482 9.23.1.4 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.50 41.0 3.08e-01 96.7% 70.9%
3967619 244.3.1.6 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › TSCPD 0.50 42.0 3.45e-01 98.3% 66.7%
3798258 109.21.1.0 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain 0.50 39.0 2.35e-01 95.0% 57.9%