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IMGVR_UViG_3300021256_004082-3300021256-Ga0223826_1000019031

Arc-Vir

IMGVR_UViG_3300021256_004082-3300021256-Ga0223826_1000019031

Identity

Kingdom:
archaea

Quality

86.4 mean pLDDT

Cluster

View cluster (3 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-100_182-243_325-388
PDB
Domain cluster: rep: KT852578.1__ALJ98046.1__BMBtp1_54__00054__D4-184
D2 high residues 103-180
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u5ei01 1.10.10.1760 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L36 0.59 35.0 3.80e-01 91.0% 70.1%
4c23B02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 40.0 2.86e-01 89.7% 23.5%
1gzsB00 1.10.4120.10 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain 0.55 41.0 3.30e-01 80.8% 82.4%
4bwcA02 1.10.439.20 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Phospholipase B-like, domain 2 0.55 46.0 4.13e-01 97.4% 92.3%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.55 39.0 3.73e-01 75.6% 77.2%
4kwaB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 46.0 3.50e-01 94.9% 60.4%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.55 47.0 3.02e-01 100.0% 80.9%
2hfiA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.54 39.0 3.45e-01 78.2% 69.1%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 4.16e-01 71.8% 100.0%
1vluA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 39.0 2.77e-01 82.1% 86.9%
8gy0A01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.51 36.0 2.56e-01 76.9% 28.8%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3272971 4299.1.1.1 ↗ alpha arrays › BSD domain › BSD domain › BSD domain › BSD 0.62 54.0 5.36e-01 98.7% 98.8%
1872853 2484.1.1.32 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_C 0.60 40.0 2.88e-01 89.7% 24.0%
4363025 2008.1.1.195 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_Eco47II 0.59 45.0 3.29e-01 83.3% 99.6%
3968682 191.1.1.30 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_28 0.58 42.0 3.78e-01 78.2% 65.2%
4155214 621.1.1.3 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB 0.57 45.0 2.85e-01 84.6% 37.5%
3645254 109.52.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › FRIGIDA flowering-time regulator › FRIGIDA flowering-time regulator › Frigida 0.57 42.0 2.81e-01 80.8% 28.2%
3176117 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.55 42.0 2.59e-01 85.9% 12.6%
3710895 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.54 33.0 2.95e-01 73.1% 40.0%
3654966 603.1.1.6 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 0.54 41.0 3.41e-01 82.1% 79.3%
4523811 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.53 38.0 3.34e-01 78.2% 53.6%
3365849 109.4.1.77 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › AAR2 0.52 41.0 3.10e-01 85.9% 46.5%
3589724 162.1.1.0 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.52 41.0 3.77e-01 97.4% 63.5%
4952255 129.1.1.11 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › ApbA_C 0.51 37.0 3.22e-01 79.5% 92.3%
3240455 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 38.0 3.68e-01 82.1% 87.8%
3273217 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.51 37.0 3.57e-01 82.1% 82.1%
4205364 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.50 42.0 2.94e-01 97.4% 45.9%
5040771 2004.1.1.85 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ArsA_ATPase 0.50 40.0 2.71e-01 89.7% 74.2%
3909247 192.8.1.378 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › BRINP 0.50 37.0 3.10e-01 78.2% 72.6%
4952071 129.1.1.11 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › ApbA_C 0.50 37.0 3.18e-01 79.5% 91.5%
D3 high residues 248-321
PDB
Domain cluster: rep: IMGVR_UViG_3300045988_181258-3300045988-Ga0495776_178587_18_737__D100-173