←Back to structures
IMGVR_UViG_3300021279_000048-3300021279-Ga0214521_10005661
Arc-VirIMGVR_UViG_3300021279_000048-3300021279-Ga0214521_10005661
Identity
- Kingdom:
- archaea
Quality
73.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-36
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ho6B00 | 3.40.50.11050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain | 0.64 | 52.0 | 3.22e-01 | 100.0% | 26.6% |
| 3sokB00 | 3.30.700.10 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin | 0.64 | 54.0 | 3.64e-01 | 100.0% | 48.6% |
| 8aa9A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 45.0 | 3.27e-01 | 80.6% | 78.9% |
| 4p5nA00 | 2.30.30.1060 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 44.0 | 3.73e-01 | 86.1% | 66.2% |
| 4f4oC01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.62 | 51.0 | 4.54e-01 | 100.0% | 68.4% |
| 2kssA01 | 2.30.30.630 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 43.0 | 3.85e-01 | 86.1% | 85.7% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 44.0 | 3.78e-01 | 91.7% | 47.8% |
| 5cfvA01 | 3.30.700.10 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin | 0.58 | 46.0 | 3.48e-01 | 100.0% | 50.5% |
| 1icwB00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.58 | 43.0 | 3.73e-01 | 88.9% | 50.0% |
| 6p2uA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.58 | 40.0 | 3.71e-01 | 94.4% | 50.0% |
| 3tvkA00 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.58 | 45.0 | 2.95e-01 | 88.9% | 81.4% |
| 3qf7A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 44.0 | 2.63e-01 | 91.7% | 11.9% |
| 2uvaG09 | 2.40.128.700 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 42.0 | 3.20e-01 | 100.0% | 68.1% |
| 1b25A02 | 1.10.569.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 | 0.55 | 43.0 | 2.89e-01 | 97.2% | 34.8% |
| 3ju4A04 | 4.10.1090.10 | Few Secondary Structures › Irregular › Endosialidase, domain 4 › Endosialidase, domain 4 | 0.55 | 37.0 | 2.45e-01 | 80.6% | 13.6% |
| 1l6rA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.54 | 37.0 | 2.46e-01 | 88.9% | 14.0% |
| 2lrsA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 40.0 | 3.46e-01 | 94.4% | 76.1% |
| 1yfsA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 40.0 | 2.47e-01 | 88.9% | 21.5% |
| 3kbgA02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.51 | 36.0 | 3.37e-01 | 83.3% | 100.0% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 36.0 | 3.29e-01 | 83.3% | 70.9% |
| 2csvA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.50 | 36.0 | 3.14e-01 | 83.3% | 44.4% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3264942 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 53.0 | 5.59e-01 | 86.1% | 100.0% |
| 3584017 | 375.1.1.85 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Auto_anti-p27 | 0.69 | 51.0 | 4.87e-01 | 94.4% | 76.0% |
| 3666090 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 50.0 | 4.64e-01 | 91.7% | 70.0% |
| 5066039 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.63 | 49.0 | 2.74e-01 | 94.4% | 6.5% |
| 3931558 | 207.1.1.156 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 | 0.62 | 48.0 | 2.70e-01 | 97.2% | 6.6% |
| 3789571 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 47.0 | 4.62e-01 | 91.7% | 87.5% |
| 3291325 | 317.1.1.6 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › RamC_N | 0.58 | 43.0 | 2.85e-01 | 88.9% | 71.1% |
| 3237862 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.58 | 41.0 | 4.03e-01 | 88.9% | 70.0% |
| 3742938 | 4.1.1.102 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_3 | 0.57 | 45.0 | 3.83e-01 | 94.4% | 81.5% |
| 3949804 | 3708.1.1.1 ↗ | a+b three layers › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › T7SS_ESX1_EccB | 0.57 | 45.0 | 3.88e-01 | 97.2% | 93.8% |
| 4999495 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.57 | 44.0 | 2.89e-01 | 94.4% | 76.1% |
| 4001675 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.55 | 42.0 | 3.64e-01 | 83.3% | 76.7% |
| 3930331 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 39.0 | 2.96e-01 | 91.7% | 96.0% |
| 3864297 | 922.1.1.7 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_ADAMTS | 0.53 | 42.0 | 2.99e-01 | 91.7% | 35.2% |
| 3298962 | 2003.1.3.6 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_3 | 0.52 | 39.0 | 2.51e-01 | 91.7% | 56.9% |
| 3333548 | 2002.1.1.8 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Cellulase | 0.52 | 36.0 | 2.15e-01 | 86.1% | 7.6% |
| 3172177 | 2005.1.1.4 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase | 0.51 | 40.0 | 2.41e-01 | 88.9% | 24.1% |
| 3680403 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.51 | 42.0 | 2.82e-01 | 100.0% | 95.2% |
| 3782038 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 40.0 | 3.04e-01 | 97.2% | 79.0% |