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IMGVR_UViG_3300021285_000027-3300021285-Ga0214509_10005073
Arc-VirIMGVR_UViG_3300021285_000027-3300021285-Ga0214509_10005073
Identity
- Kingdom:
- archaea
Quality
87.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-183
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20296.4 best | MTaX1 | 81.0 | 1.40e-22 | 65.0% | 99.1% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2czrA01 | 3.40.1350.70 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain | 0.62 | 35.0 | 4.30e-01 | 86.4% | 89.6% |
| 3tqmA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.59 | 29.0 | 3.95e-01 | 91.5% | 91.1% |
| 1kafA00 | 3.90.1150.20 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain | 0.59 | 36.0 | 4.54e-01 | 89.3% | 100.0% |
| 2inbA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.59 | 42.0 | 4.80e-01 | 87.6% | 100.0% |
| 1luiA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.58 | 32.0 | 3.99e-01 | 84.2% | 88.0% |
| 3devA02 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.57 | 36.0 | 4.36e-01 | 88.7% | 97.4% |
| 3g98A00 | 3.10.310.40 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.56 | 35.0 | 4.30e-01 | 74.0% | 100.0% |
| 2rqlA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.53 | 28.0 | 3.51e-01 | 90.4% | 89.5% |
| 1v1pB02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 22.0 | 3.31e-01 | 74.0% | 91.9% |
| 1imuA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.52 | 28.0 | 3.35e-01 | 90.4% | 78.5% |
| 2b4vA03 | 3.30.70.1970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 24.0 | 3.12e-01 | 88.1% | 74.7% |
| 2qb7B02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.52 | 39.0 | 4.36e-01 | 88.7% | 99.3% |
| 4q6lA00 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.52 | 31.0 | 3.48e-01 | 83.1% | 74.8% |
| 2nttA02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 20.0 | 3.24e-01 | 73.4% | 91.4% |
| 5vipB01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.51 | 45.0 | 4.19e-01 | 96.0% | 91.6% |
| 5b7gA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.50 | 42.0 | 3.78e-01 | 89.3% | 96.8% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4160601 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.75 | 49.0 | 5.94e-01 | 85.3% | 100.0% |
| 5004848 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.63 | 48.0 | 5.36e-01 | 80.8% | 100.0% |
| 4623130 | 7503.1.1.18 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › PF30449 | 0.58 | 38.0 | 4.28e-01 | 91.5% | 85.2% |
| 4057405 | 7503.1.1.3 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N | 0.57 | 37.0 | 4.21e-01 | 90.4% | 85.9% |
| 3928316 | 2.2.1.0 ↗ | beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins | 0.57 | 23.0 | 3.21e-01 | 96.0% | 75.0% |
| 3173661 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.57 | 39.0 | 4.45e-01 | 89.3% | 94.6% |
| 5041799 | 2008.1.1.220 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_10 | 0.56 | 35.0 | 3.83e-01 | 81.4% | 75.7% |
| 5026660 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.56 | 39.0 | 4.41e-01 | 78.5% | 91.3% |
| 4078209 | 7503.1.1.3 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N | 0.56 | 38.0 | 4.12e-01 | 98.3% | 83.4% |
| 5035680 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 45.0 | 4.54e-01 | 85.9% | 91.0% |
| 4496364 | 7503.1.1.3 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N | 0.55 | 38.0 | 4.17e-01 | 92.1% | 86.4% |
| 3336952 | 2008.1.1.50 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YqaJ | 0.55 | 43.0 | 3.82e-01 | 81.4% | 73.3% |
| 4351491 | 7503.1.1.3 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N | 0.55 | 36.0 | 3.98e-01 | 91.5% | 82.1% |
| 11017 | 2008.1.1.42 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Endonuc-HincII | 0.54 | 44.0 | 3.92e-01 | 85.9% | 79.9% |
| 4954869 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.54 | 36.0 | 4.16e-01 | 88.1% | 93.1% |
| 5078854 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.52 | 36.0 | 4.18e-01 | 88.1% | 99.2% |
| 4990152 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.52 | 36.0 | 4.05e-01 | 85.9% | 92.6% |
| 4990325 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.50 | 45.0 | 4.53e-01 | 97.2% | 96.6% |
| 4033510 | 2.2.1.6 ↗ | beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › SSL_OB | 0.50 | 21.0 | 2.83e-01 | 89.8% | 69.5% |
D2
high
residues 218-420
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gefA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.71 | 40.0 | 5.06e-01 | 88.7% | 91.7% |
| 2eo0B00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.70 | 38.0 | 4.79e-01 | 85.7% | 86.3% |
| 1ob8A00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.67 | 37.0 | 4.74e-01 | 86.2% | 91.6% |
| 1rznA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.66 | 43.0 | 4.96e-01 | 85.2% | 88.0% |
| 4esjA01 | 3.40.210.30 | Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › Dam replacing family, catalytic PD-(D/E)XK domain | 0.65 | 46.0 | 5.19e-01 | 100.0% | 93.6% |
| 3hw5B00 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.58 | 41.0 | 4.41e-01 | 97.5% | 82.8% |
| 4cgxA00 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.57 | 38.0 | 4.19e-01 | 96.6% | 83.2% |
| 6xzqA01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.57 | 40.0 | 4.48e-01 | 97.5% | 90.1% |
| 4cgsA00 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.56 | 38.0 | 4.18e-01 | 97.5% | 82.7% |
| 1tx3D00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.54 | 49.0 | 4.59e-01 | 98.5% | 80.3% |
| 2ezvA01 | 3.40.600.40 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › Type II restriction enzyme SfiI, multifunctional domain | 0.51 | 37.0 | 3.78e-01 | 100.0% | 76.1% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.50 | 40.0 | 4.15e-01 | 97.5% | 87.4% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4967616 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.89 | 70.0 | 7.44e-01 | 100.0% | 90.0% |
| 5028193 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.71 | 42.0 | 5.21e-01 | 86.2% | 94.4% |
| 4956648 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.69 | 44.0 | 5.26e-01 | 88.7% | 94.8% |
| 4384457 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.69 | 40.0 | 4.94e-01 | 85.7% | 89.2% |
| 4571342 | 2008.1.1.190 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27258 | 0.69 | 50.0 | 5.39e-01 | 100.0% | 87.6% |
| 4942264 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.68 | 41.0 | 5.08e-01 | 86.7% | 96.0% |
| 4149106 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.66 | 39.0 | 4.73e-01 | 88.7% | 88.1% |
| 4284406 | 2008.1.1.13 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecU | 0.63 | 43.0 | 4.84e-01 | 99.0% | 88.7% |
| 4933590 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.62 | 40.0 | 4.87e-01 | 91.6% | 100.0% |
| 5081637 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.62 | 43.0 | 5.04e-01 | 87.7% | 100.0% |
| 2846582 | 2008.1.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Flu_PA | 0.57 | 41.0 | 4.33e-01 | 97.5% | 81.5% |
| 4863355 | 2008.1.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Flu_PA | 0.53 | 41.0 | 3.83e-01 | 97.5% | 64.0% |
| 4981147 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.53 | 40.0 | 4.38e-01 | 85.2% | 94.5% |
| 5040758 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.53 | 41.0 | 4.44e-01 | 87.2% | 95.9% |