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IMGVR_UViG_3300021285_000052-3300021285-Ga0214509_10009453
Arc-VirIMGVR_UViG_3300021285_000052-3300021285-Ga0214509_10009453
Identity
- Kingdom:
- archaea
Quality
90.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-99
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1oqcA00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.67 | 51.0 | 4.75e-01 | 81.8% | 76.8% |
| 4p9tA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.64 | 47.0 | 4.29e-01 | 79.5% | 91.7% |
| 2odvA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 55.0 | 5.03e-01 | 97.7% | 92.0% |
| 3a04A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.59 | 46.0 | 4.21e-01 | 84.1% | 76.7% |
| 1eteA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.58 | 44.0 | 3.85e-01 | 80.7% | 80.6% |
| 2kxpA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.57 | 46.0 | 4.38e-01 | 90.9% | 91.6% |
| 2xzeB00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.56 | 48.0 | 4.13e-01 | 100.0% | 60.9% |
| 3c5wA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.56 | 48.0 | 3.66e-01 | 100.0% | 62.3% |
| 2c5iT00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 48.0 | 4.75e-01 | 98.9% | 100.0% |
| 1u84A00 | 1.10.340.20 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain | 0.53 | 31.0 | 3.27e-01 | 86.4% | 63.0% |
| 5nl6B01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 47.0 | 4.24e-01 | 100.0% | 92.6% |
| 2o3fA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.84e-01 | 90.9% | 80.5% |
| 3jsbA01 | 1.20.1440.300 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain | 0.52 | 36.0 | 3.73e-01 | 90.9% | 77.8% |
| 4u5qB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 43.0 | 2.83e-01 | 97.7% | 19.7% |
| 4hkuB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 43.0 | 3.57e-01 | 100.0% | 95.4% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3816443 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.83 | 67.0 | 7.18e-01 | 92.0% | 100.0% |
| 3928624 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.79 | 70.0 | 6.72e-01 | 95.5% | 87.0% |
| 3728294 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.79 | 71.0 | 6.93e-01 | 97.7% | 96.8% |
| 4253707 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.79 | 71.0 | 6.69e-01 | 98.9% | 96.2% |
| 3652572 | 170.1.1.15 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 | 0.78 | 69.0 | 6.92e-01 | 96.6% | 100.0% |
| 3645855 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.78 | 71.0 | 6.95e-01 | 100.0% | 93.7% |
| 4634618 | 170.1.1.25 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › PNMA | 0.78 | 70.0 | 6.48e-01 | 98.9% | 89.1% |
| 3175328 | 601.30.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › TYA | 0.78 | 68.0 | 6.79e-01 | 95.5% | 97.8% |
| 3176329 | 2484.1.1.237 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TYA | 0.78 | 68.0 | 6.78e-01 | 95.5% | 97.8% |
| 3175855 | 4967.1.1.27 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › TYA | 0.78 | 68.0 | 6.64e-01 | 95.5% | 92.6% |
| 3173429 | 101.1.2.463 ↗ | alpha arrays › HTH › HTH › winged helix domain › TYA | 0.78 | 68.0 | 6.77e-01 | 95.5% | 97.8% |
| 3178473 | 192.29.1.119 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TYA | 0.78 | 68.0 | 6.76e-01 | 95.5% | 97.8% |
| 3171796 | 109.4.1.2424 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TYA | 0.77 | 67.0 | 6.72e-01 | 95.5% | 97.8% |
| 3170215 | 1.1.1.32 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › TYA | 0.77 | 67.0 | 6.72e-01 | 95.5% | 97.8% |
| 3173074 | 606.1.1.7 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › TYA | 0.77 | 67.0 | 6.71e-01 | 95.5% | 97.8% |
| 3365801 | 170.1.1.15 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 | 0.77 | 70.0 | 6.84e-01 | 100.0% | 96.8% |
| 3171686 | 170.2.1.26 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › TYA | 0.77 | 67.0 | 6.71e-01 | 95.5% | 97.8% |
| 3170562 | 2484.5.1.5 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › TYA | 0.77 | 67.0 | 6.69e-01 | 95.5% | 97.8% |
| 4049000 | 170.1.1.17 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › TYA | 0.77 | 67.0 | 6.56e-01 | 95.5% | 92.6% |
| 3174609 | 4.1.1.345 ↗ | beta barrels › SH3 › SH3 › SH3 › TYA | 0.77 | 67.0 | 6.55e-01 | 95.5% | 92.6% |
| 4618822 | 170.1.1.15 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 | 0.77 | 67.0 | 6.67e-01 | 95.5% | 100.0% |
| 3170408 | 601.1.1.108 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › TYA | 0.76 | 66.0 | 6.63e-01 | 95.5% | 97.8% |
| 3178411 | 101.1.1.311 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › TYA | 0.76 | 69.0 | 6.73e-01 | 100.0% | 96.8% |
| 3171256 | 304.48.1.58 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TYA | 0.76 | 67.0 | 6.61e-01 | 98.9% | 95.8% |
| 3519399 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.76 | 68.0 | 6.75e-01 | 100.0% | 97.8% |
| 3356582 | 170.1.1.15 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 | 0.75 | 65.0 | 6.25e-01 | 95.5% | 92.0% |
| 3763289 | 304.24.1.29 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › PNMA | 0.75 | 66.0 | 6.20e-01 | 98.9% | 89.1% |
| 3173296 | 196.1.1.4 ↗ | alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › TYA | 0.75 | 66.0 | 6.50e-01 | 97.7% | 93.7% |
| 3819550 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.75 | 64.0 | 6.48e-01 | 93.2% | 100.0% |
| 4042505 | 170.1.1.17 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › TYA | 0.75 | 66.0 | 6.47e-01 | 97.7% | 93.7% |
| 3501300 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.75 | 66.0 | 6.37e-01 | 98.9% | 90.0% |
| 3881657 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.75 | 62.0 | 6.42e-01 | 90.9% | 100.0% |
| 3171159 | 1.1.1.32 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › TYA | 0.74 | 66.0 | 6.43e-01 | 97.7% | 93.7% |
| 3176681 | 109.3.1.132 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › TYA | 0.74 | 65.0 | 6.40e-01 | 97.7% | 93.7% |
| 3171287 | 150.1.1.83 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › TYA | 0.74 | 65.0 | 6.39e-01 | 97.7% | 93.7% |
| 3172548 | 601.3.1.12 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › TYA | 0.74 | 65.0 | 6.36e-01 | 97.7% | 93.7% |
| 3466942 | 170.1.1.15 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 | 0.74 | 65.0 | 6.19e-01 | 100.0% | 91.4% |
| 3364254 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.72 | 65.0 | 6.22e-01 | 100.0% | 93.0% |
| 4013172 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.72 | 60.0 | 6.20e-01 | 94.3% | 100.0% |
| 3514763 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.72 | 63.0 | 6.03e-01 | 100.0% | 88.6% |
| 3366265 | 170.1.1.15 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 | 0.72 | 63.0 | 5.92e-01 | 100.0% | 87.3% |
| 3419528 | 170.1.1.15 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 | 0.71 | 63.0 | 6.28e-01 | 100.0% | 98.9% |
| 3926954 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.71 | 62.0 | 5.99e-01 | 98.9% | 92.0% |
| 3633075 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.70 | 60.0 | 6.04e-01 | 95.5% | 95.6% |
| 4446409 | 109.4.1.1756 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30849 | 0.58 | 47.0 | 3.72e-01 | 89.8% | 66.2% |
| 1688882 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.56 | 42.0 | 4.26e-01 | 79.5% | 88.4% |
| 4660186 | 2008.1.1.159 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Csa1 | 0.55 | 39.0 | 2.78e-01 | 75.0% | 57.9% |
| 3517837 | 109.4.1.471 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GCFC | 0.54 | 44.0 | 2.93e-01 | 92.0% | 28.7% |
| 3688639 | 109.4.1.703 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CTLH | 0.52 | 38.0 | 3.02e-01 | 77.3% | 43.6% |
| 3797519 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 43.0 | 2.70e-01 | 95.5% | 40.7% |
| 4403198 | 604.13.1.1 ↗ | alpha bundles › Spectrin repeat-like › USP8 N-terminal domain-like › USP8 N-terminal domain-like › USP8_dimer | 0.51 | 45.0 | 4.00e-01 | 100.0% | 70.0% |
| 3819556 | 109.4.1.471 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GCFC | 0.51 | 43.0 | 3.85e-01 | 100.0% | 94.1% |