Back to structures

IMGVR_UViG_3300021300_000004-3300021300-Ga0214523_100005243

Arc-Vir

IMGVR_UViG_3300021300_000004-3300021300-Ga0214523_100005243

Quality

76.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-60
PDB
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1itvA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.73 56.0 3.80e-01 100.0% 24.1%
1hxnA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.69 54.0 3.60e-01 100.0% 22.9%
1genA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.66 50.0 3.43e-01 100.0% 23.5%
1dl5A02 3.55.20.10 Alpha Beta › 3-Layer(bab) Sandwich › Protein-l-isoaspartate O-methyltransferase; Chain: A, domain 2 › Protein-L-isoaspartyl O-methyltransferase, C-terminal domain 0.66 45.0 3.58e-01 100.0% 35.3%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 45.0 4.83e-01 87.7% 89.4%
4czxA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 54.0 3.39e-01 100.0% 17.0%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.64 42.0 4.34e-01 89.5% 72.7%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.62 55.0 4.77e-01 100.0% 92.1%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.62 46.0 4.30e-01 100.0% 63.9%
3pufL00 2.40.128.680 Mainly Beta › Beta Barrel › Lipocalin › 0.61 51.0 4.14e-01 98.2% 66.4%
1q7hA01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.60 47.0 4.62e-01 100.0% 78.5%
1nr0A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 53.0 3.31e-01 100.0% 18.6%
3kioC01 2.40.128.680 Mainly Beta › Beta Barrel › Lipocalin › 0.60 50.0 4.37e-01 98.2% 84.9%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.59 38.0 3.34e-01 87.7% 45.1%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 3.04e-01 100.0% 25.1%
4aw8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 46.0 3.40e-01 100.0% 69.4%
3d4eA02 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.57 49.0 4.44e-01 96.5% 73.1%
2b5lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 50.0 3.02e-01 100.0% 15.2%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.57 48.0 3.20e-01 100.0% 38.3%
7kfuC01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.57 36.0 3.32e-01 87.7% 48.0%
2jpiA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.56 39.0 3.32e-01 100.0% 43.8%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 46.0 2.98e-01 100.0% 25.7%
3h3lC00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.56 46.0 3.10e-01 93.0% 71.7%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 47.0 3.48e-01 100.0% 83.5%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 35.0 3.43e-01 91.2% 56.1%
2ra9A01 3.10.540.10 Alpha Beta › Roll › duf1285 like fold › duf1285 like domain 0.55 39.0 3.98e-01 87.7% 79.6%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.55 46.0 4.22e-01 100.0% 78.0%
5ocrA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 3.09e-01 100.0% 77.7%
3vm7A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 38.0 3.27e-01 73.7% 87.8%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 40.0 3.73e-01 86.0% 60.8%
8d3lA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.55 34.0 3.03e-01 86.0% 39.8%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 35.0 3.49e-01 91.2% 61.7%
1upsB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 41.0 2.76e-01 86.0% 26.8%
6n44A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 42.0 3.24e-01 87.7% 54.7%
2va0A00 3.30.450.160 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 41.0 3.53e-01 86.0% 100.0%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.46e-01 87.7% 64.0%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 3.12e-01 87.7% 54.3%
2ktsA01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.53 40.0 3.43e-01 86.0% 72.5%
3fvcA01 2.30.30.1230 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 3.89e-01 100.0% 63.7%
8b55A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 39.0 2.81e-01 86.0% 25.7%
3u9sE04 3.30.700.40 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.53 37.0 2.91e-01 73.7% 88.8%
1hdhA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 34.0 3.13e-01 71.9% 49.4%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 2.80e-01 86.0% 32.2%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 40.0 3.18e-01 87.7% 78.1%
7b2sA01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.52 39.0 2.99e-01 87.7% 51.6%
1gbgA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 2.75e-01 87.7% 30.4%
8ep4C01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 2.94e-01 100.0% 77.0%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.51 42.0 3.03e-01 100.0% 89.5%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.51 43.0 3.67e-01 100.0% 99.0%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 41.0 2.73e-01 100.0% 79.7%
2o3iA02 2.40.390.10 Mainly Beta › Beta Barrel › CV3147-like › CV3147-like 0.50 41.0 3.22e-01 93.0% 42.0%
1bymA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.50 39.0 3.40e-01 89.5% 70.1%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3993085 5.1.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.79 57.0 3.84e-01 100.0% 22.1%
3879259 5.1.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.78 57.0 3.80e-01 100.0% 21.5%
4066726 5.1.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.73 55.0 3.94e-01 100.0% 29.7%
3440727 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 52.0 2.88e-01 100.0% 5.7%
3957482 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.68 55.0 5.62e-01 98.2% 94.5%
3950423 243.3.1.24 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › LGFP 0.68 55.0 4.30e-01 100.0% 40.8%
3788776 5.1.4.38 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.67 49.0 3.05e-01 100.0% 13.4%
4552798 3699.1.1.0 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain 0.66 43.0 4.98e-01 93.0% 95.0%
5060936 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.66 44.0 3.77e-01 100.0% 43.3%
3742689 5.1.4.661 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.65 54.0 3.33e-01 100.0% 16.5%
4079675 4959.1.1.1 a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.64 43.0 3.54e-01 84.2% 36.7%
3621078 5.1.4.164 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.64 56.0 3.38e-01 100.0% 19.0%
5081581 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 56.0 3.66e-01 100.0% 23.9%
4572902 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.64 56.0 3.33e-01 100.0% 16.1%
3601975 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 55.0 3.40e-01 100.0% 19.4%
4984519 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.63 53.0 5.05e-01 100.0% 80.0%
5035419 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.63 51.0 3.22e-01 100.0% 17.3%
3738769 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 53.0 3.33e-01 100.0% 18.9%
4242897 5.1.4.61 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PAN2_N 0.63 54.0 3.30e-01 100.0% 15.3%
4061222 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.62 54.0 2.99e-01 100.0% 6.9%
3484745 5.1.4.313 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_BBS7 0.62 51.0 3.18e-01 100.0% 16.5%
3212893 5.1.3.57 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › IKI3 0.62 53.0 3.26e-01 100.0% 15.6%
3172579 5.1.4.128 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rax2 0.61 49.0 3.05e-01 100.0% 15.2%
3936024 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 54.0 3.38e-01 100.0% 21.9%
4889001 5.1.4.280 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st 0.61 52.0 3.21e-01 100.0% 16.3%
3394677 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 52.0 3.31e-01 100.0% 19.1%
1118859 59.1.2.1 beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › RNase_H2_suC 0.61 51.0 3.95e-01 98.2% 67.1%
3234509 331.2.1.8 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › CPSF73-100_C 0.61 49.0 4.30e-01 96.5% 62.1%
3619283 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.60 50.0 3.07e-01 100.0% 14.6%
3700695 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 53.0 3.25e-01 100.0% 16.8%
3701280 5.1.4.313 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_BBS7 0.60 52.0 3.20e-01 100.0% 16.7%
4958012 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.59 39.0 3.64e-01 100.0% 52.0%
4031431 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.59 42.0 4.05e-01 100.0% 66.2%
4234211 3111.1.1.0 beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.59 37.0 3.33e-01 75.4% 42.4%
3537300 5.1.4.313 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_BBS7 0.59 49.0 3.13e-01 100.0% 26.8%
3840061 4991.1.1.0 extended segments › Lag-3 N-terminal region › Lag-3 N-terminal region › Lag-3 N-terminal region 0.58 52.0 3.13e-01 100.0% 16.1%
4008552 6146.1.1.2 a+b two layers › Cas3 C-terminal domain › Cas3 C-terminal domain › Cas3 C-terminal domain › PF30455 0.58 49.0 4.23e-01 100.0% 89.8%
4359892 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.58 37.0 3.38e-01 91.2% 46.3%
3783714 331.1.1.5 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.58 45.0 4.05e-01 98.2% 62.7%
3631797 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.58 50.0 3.16e-01 100.0% 22.0%
3948032 3155.1.1.1 a+b two layers › Uncharacterized protein yohN › Uncharacterized protein yohN › Uncharacterized protein yohN › RcnB 0.58 45.0 4.12e-01 87.7% 79.5%
3709033 5.1.4.391 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CFAP43_N 0.57 48.0 3.04e-01 100.0% 18.0%
3591883 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.57 51.0 3.18e-01 100.0% 18.1%
5061645 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.57 49.0 4.77e-01 96.5% 98.4%
5055306 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 43.0 2.88e-01 84.2% 40.0%
4031750 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.57 43.0 3.67e-01 98.2% 48.5%
4605041 3018.1.1.0 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.57 46.0 4.17e-01 100.0% 64.7%
3936499 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 49.0 2.73e-01 100.0% 8.0%
3999634 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.56 48.0 4.27e-01 100.0% 83.5%
3739664 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.54 39.0 3.75e-01 100.0% 65.7%
1298711 9.1.1.13 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › ZinT 0.54 43.0 3.15e-01 100.0% 66.8%
3286200 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 43.0 2.77e-01 100.0% 27.0%
3999890 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 46.0 2.79e-01 100.0% 15.6%
3416069 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 40.0 3.75e-01 96.5% 65.7%
4261891 3454.1.1.8 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › TcpS 0.53 38.0 3.90e-01 98.2% 80.0%
3690784 10.1.1.22 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF1349 0.53 41.0 2.76e-01 86.0% 32.3%
3601202 5.1.4.220 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.53 46.0 2.89e-01 100.0% 19.1%
3213871 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 45.0 2.83e-01 100.0% 17.6%
3280585 241.11.1.1 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.52 42.0 3.54e-01 96.5% 87.3%
5058484 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.52 41.0 3.85e-01 89.5% 70.0%
3192398 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 43.0 2.58e-01 100.0% 37.1%
3706874 5.1.3.243 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_WDR35_2nd 0.52 45.0 2.82e-01 100.0% 19.7%
3961809 9.11.1.1 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.52 43.0 3.93e-01 100.0% 87.5%
3894260 5.1.4.220 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.52 45.0 2.77e-01 100.0% 18.3%
3551536 719.1.1.3 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PAXX 0.51 39.0 3.35e-01 91.2% 79.1%
5083698 331.1.1.5 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.51 37.0 3.57e-01 98.2% 69.2%
1032602 4.1.1.127 beta barrels › SH3 › SH3 › SH3 › DtxR 0.50 39.0 3.40e-01 89.5% 70.1%