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IMGVR_UViG_3300021326_000168-3300021326-Ga0214518_1045337

Arc-Vir

IMGVR_UViG_3300021326_000168-3300021326-Ga0214518_1045337

Quality

93.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-141
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13173.13 best AAA_14 91.1 8.10e-26 91.2% 90.6%
D2 medium residues 270-406
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13635.13 best DUF4143 36.0 8.00e-09 60.6% 56.2%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2inbA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.78 55.0 5.75e-01 72.3% 99.2%
3bm3A00 3.40.91.80 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.76 64.0 5.08e-01 87.6% 90.7%
2e52B01 3.40.91.70 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Type II restriction endonuclease, HindIII 0.76 61.0 5.13e-01 84.7% 84.4%
2ewfA03 3.40.91.50 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.75 61.0 5.13e-01 85.4% 81.3%
2i2cA01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.70 42.0 4.44e-01 75.2% 65.6%
2eo0B00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.70 49.0 5.17e-01 72.3% 91.9%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.67 42.0 5.09e-01 76.6% 95.6%
4xltA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 47.0 4.84e-01 73.7% 89.1%
2i2xB02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.64 50.0 5.05e-01 96.4% 81.8%
5lnmA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 46.0 4.47e-01 74.5% 82.0%
4fvaC00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.63 50.0 4.07e-01 83.9% 80.9%
4s1wB02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.61 44.0 4.33e-01 73.7% 76.0%
2amlA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.61 44.0 4.36e-01 74.5% 76.2%
1a04A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 48.0 5.06e-01 96.4% 91.9%
3fovA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.60 42.0 4.76e-01 71.5% 94.1%
3m6mD00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 46.0 4.91e-01 97.8% 94.1%
2ostD00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.59 44.0 4.46e-01 76.6% 91.7%
4alzA01 3.30.1340.30 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 0.58 28.0 3.87e-01 80.3% 100.0%
4obxA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 41.0 3.45e-01 73.0% 94.9%
3qw4B02 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 43.0 3.84e-01 78.1% 79.2%
1dxyA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 39.0 3.50e-01 70.8% 74.5%
4i1tA02 3.30.70.2640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Arenavirus RNA polymerase 0.56 34.0 4.17e-01 82.5% 97.6%
1pg4A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.55 49.0 3.39e-01 100.0% 64.9%
3qvoA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 43.0 3.84e-01 86.9% 84.7%
2g6tA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 36.0 4.13e-01 94.9% 96.9%
1e0tA01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.52 35.0 3.70e-01 96.4% 74.8%
5macA02 3.20.20.110 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain 0.52 43.0 3.22e-01 87.6% 76.9%
6tdxG01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.50 37.0 3.26e-01 78.1% 53.3%
3vseB02 3.30.750.80 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like 0.50 32.0 3.61e-01 98.5% 86.0%
1z2aA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 44.0 4.20e-01 97.8% 93.3%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4952288 2008.1.1.114 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 0.99 71.0 8.43e-01 73.7% 100.0%
5059469 2008.1.1.114 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 0.87 61.0 7.20e-01 72.3% 100.0%
3952449 2008.1.1.114 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 0.82 57.0 6.38e-01 70.8% 97.3%
3956278 2008.1.1.114 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 0.81 59.0 6.55e-01 74.5% 97.3%
5057728 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.81 58.0 6.10e-01 73.7% 98.4%
4971490 2008.4.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › TBP-interacting protein N-terminal domain-like › TBP-interacting protein N-terminal domain-like 0.81 56.0 6.22e-01 70.8% 91.8%
4446863 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.80 60.0 6.37e-01 100.0% 87.0%
4942427 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.80 55.0 6.21e-01 72.3% 91.4%
4222489 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.79 56.0 6.24e-01 86.9% 90.8%
5057572 2008.1.1.114 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 0.79 57.0 6.58e-01 73.7% 100.0%
4640322 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.79 55.0 6.29e-01 71.5% 94.3%
4931384 2008.1.1.141 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.79 57.0 6.06e-01 73.7% 93.3%
4997269 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.79 60.0 5.51e-01 78.1% 92.9%
5031044 2008.1.1.141 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.79 57.0 5.94e-01 73.7% 90.4%
5000615 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.79 54.0 5.58e-01 70.1% 95.4%
4488209 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.79 58.0 6.21e-01 100.0% 87.4%
4940725 2008.1.1.141 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.79 57.0 5.85e-01 73.7% 93.8%
4945220 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.79 55.0 5.92e-01 72.3% 89.2%
4127413 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.78 56.0 6.37e-01 87.6% 96.2%
4088649 2008.1.1.141 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.78 55.0 6.42e-01 83.9% 100.0%
4967964 2008.1.1.141 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.78 57.0 5.96e-01 74.5% 90.4%
4089106 2008.1.1.141 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.78 56.0 5.79e-01 73.7% 93.1%
4988932 2008.1.1.141 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.78 57.0 5.98e-01 75.2% 90.4%
4277443 2008.1.1.141 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.78 56.0 6.03e-01 74.5% 93.3%
4947990 2008.1.1.218 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HTH_3 0.78 54.0 5.92e-01 71.5% 95.7%
5076022 2008.1.1.141 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.78 55.0 6.10e-01 72.3% 100.0%
5074941 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.78 55.0 6.12e-01 73.0% 100.0%
4950788 2008.1.1.114 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 0.78 56.0 6.24e-01 74.5% 100.0%
4947992 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 57.0 6.30e-01 86.9% 93.6%
5063644 2008.1.1.141 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.77 55.0 6.02e-01 73.0% 96.5%
5082429 2008.1.1.141 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.77 55.0 5.80e-01 73.0% 88.8%
5031046 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 54.0 6.21e-01 71.5% 97.1%
5057413 2008.1.1.141 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.77 56.0 5.89e-01 74.5% 88.8%
5046259 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 57.0 6.32e-01 88.3% 94.5%
4935861 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 62.0 6.58e-01 93.4% 95.0%
5014169 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 58.0 6.08e-01 78.1% 91.9%
5010590 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.76 56.0 6.37e-01 89.1% 100.0%
5027581 2008.1.1.141 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.76 52.0 5.81e-01 70.1% 91.8%
5024737 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.75 56.0 5.29e-01 76.6% 91.9%
4508113 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.75 54.0 6.06e-01 83.9% 96.2%
4927057 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.75 54.0 5.54e-01 73.7% 97.7%
4990184 2008.1.1.141 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.75 51.0 5.58e-01 70.1% 91.3%
4940209 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.74 50.0 5.98e-01 74.5% 100.0%
5037144 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.74 60.0 6.34e-01 94.9% 94.4%
4929290 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.73 53.0 5.57e-01 75.2% 95.2%
5040758 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.73 53.0 4.90e-01 74.5% 99.4%
3604181 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.73 67.0 5.72e-01 100.0% 99.1%
4958464 2008.1.1.205 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26915 0.72 53.0 5.63e-01 75.2% 89.2%
5011600 2008.1.1.108 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 0.72 51.0 5.60e-01 72.3% 100.0%
5052189 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.72 54.0 5.15e-01 78.8% 91.9%
5077266 2008.1.1.108 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 0.71 52.0 5.31e-01 74.5% 99.2%
4033230 2008.1.1.155 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › CoiA_nuc 0.71 52.0 5.14e-01 75.2% 95.2%
4991917 2008.1.1.107 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.71 57.0 5.70e-01 84.7% 99.3%
4937277 2008.1.1.108 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 0.70 52.0 5.28e-01 76.6% 91.1%
5009348 2008.1.1.108 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 0.69 49.0 5.49e-01 73.0% 99.0%
4991993 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.69 49.0 5.09e-01 72.3% 93.6%
4983181 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.69 49.0 5.22e-01 73.7% 88.3%
3990088 2008.1.1.155 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › CoiA_nuc 0.68 53.0 4.88e-01 81.8% 96.0%
4986847 2008.5.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › Uncharacterized protein AF_2093 C-terminal domain › Uncharacterized protein AF_2093 C-terminal domain › DUF6834_C 0.68 51.0 5.06e-01 76.6% 92.1%
3385518 2008.1.1.108 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 0.67 54.0 5.00e-01 84.7% 98.8%
5077869 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 55.0 5.54e-01 86.9% 97.8%
5073524 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 52.0 5.06e-01 83.9% 91.0%
4959341 2008.1.1.152 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2130 0.66 52.0 5.42e-01 83.2% 89.6%
4949772 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 47.0 5.31e-01 81.0% 97.1%
5078094 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 50.0 5.41e-01 81.8% 97.4%
4984290 2008.1.1.235 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26618 0.64 46.0 4.97e-01 74.5% 100.0%
5028457 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.63 55.0 5.48e-01 92.7% 90.0%
3603694 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.63 52.0 5.38e-01 88.3% 96.9%
4261280 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.61 46.0 4.85e-01 77.4% 94.2%
3395339 7512.1.1.1 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT 0.61 43.0 3.44e-01 72.3% 88.3%
4620724 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.59 44.0 4.71e-01 77.4% 98.3%
4306163 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.59 44.0 4.74e-01 76.6% 93.9%
None 0.53 42.0 3.16e-01 85.4% 49.2%
3411027 7512.1.1.1 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT 0.52 47.0 3.61e-01 96.4% 87.3%
4974772 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 36.0 3.31e-01 74.5% 92.3%