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IMGVR_UViG_3300021348_000508-3300021348-Ga0206695_17201271
Arc-VirIMGVR_UViG_3300021348_000508-3300021348-Ga0206695_17201271
Identity
- Kingdom:
- archaea
Quality
83.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 46-111
Domain cluster:
representative
CATH (54)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6mp7A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.86 | 78.0 | 4.86e-01 | 100.0% | 22.5% |
| 1kwgA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.85 | 78.0 | 4.69e-01 | 100.0% | 16.5% |
| 3u7vA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.82 | 73.0 | 4.47e-01 | 100.0% | 17.2% |
| 4r27B00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.81 | 74.0 | 4.47e-01 | 100.0% | 23.6% |
| 4oifB01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.81 | 74.0 | 4.45e-01 | 100.0% | 16.5% |
| 5jvkA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.79 | 68.0 | 4.32e-01 | 100.0% | 19.6% |
| 3niyA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.76 | 68.0 | 4.29e-01 | 100.0% | 19.9% |
| 4htyA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.75 | 69.0 | 4.30e-01 | 100.0% | 20.3% |
| 1r85A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.75 | 65.0 | 3.99e-01 | 100.0% | 17.0% |
| 5ay7B00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.74 | 64.0 | 4.06e-01 | 100.0% | 19.3% |
| 2pgwA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.72 | 54.0 | 3.76e-01 | 100.0% | 24.4% |
| 5m99A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.71 | 63.0 | 3.94e-01 | 100.0% | 19.8% |
| 1gqiA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.70 | 62.0 | 3.96e-01 | 100.0% | 26.2% |
| 3oa3A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.69 | 59.0 | 3.99e-01 | 100.0% | 25.3% |
| 3rcyA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.68 | 59.0 | 4.02e-01 | 100.0% | 30.7% |
| 2qgyA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.68 | 55.0 | 3.76e-01 | 100.0% | 24.8% |
| 7xg9A01 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.68 | 62.0 | 4.02e-01 | 100.0% | 25.0% |
| 3bjsA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.68 | 54.0 | 3.64e-01 | 100.0% | 22.9% |
| 6uqjA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.68 | 58.0 | 3.74e-01 | 100.0% | 20.9% |
| 3mcaA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.68 | 58.0 | 4.47e-01 | 100.0% | 75.2% |
| 2vlbC00 | 3.40.50.12500 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.67 | 58.0 | 4.03e-01 | 100.0% | 39.4% |
| 7wj9A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.67 | 58.0 | 3.76e-01 | 100.0% | 32.1% |
| 4n4pD00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.66 | 58.0 | 3.79e-01 | 100.0% | 24.0% |
| 1jcjA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.66 | 58.0 | 3.92e-01 | 100.0% | 26.2% |
| 1lwjA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.66 | 54.0 | 3.50e-01 | 100.0% | 19.0% |
| 4dnhA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.66 | 57.0 | 3.56e-01 | 100.0% | 20.7% |
| 3cyjA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.65 | 50.0 | 3.49e-01 | 100.0% | 24.1% |
| 2p9bA03 | 3.40.50.10910 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Amidohydrolase | 0.65 | 57.0 | 4.65e-01 | 98.5% | 59.7% |
| 1zunB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 55.0 | 4.05e-01 | 100.0% | 74.7% |
| 3rf9B02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.64 | 55.0 | 3.67e-01 | 100.0% | 38.8% |
| 2hmcA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.62 | 53.0 | 3.47e-01 | 100.0% | 21.0% |
| 2i5iA00 | 3.20.20.370 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase | 0.62 | 53.0 | 3.61e-01 | 100.0% | 45.0% |
| 1efaA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 54.0 | 4.37e-01 | 100.0% | 65.1% |
| 4jc0A03 | 3.30.750.200 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.60 | 51.0 | 4.28e-01 | 98.5% | 92.5% |
| 1f0iA01 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.60 | 51.0 | 3.68e-01 | 100.0% | 32.2% |
| 1wraA01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.58 | 50.0 | 3.30e-01 | 98.5% | 38.0% |
| 2ehgA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 50.0 | 3.88e-01 | 100.0% | 74.5% |
| 2g3mA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.57 | 47.0 | 3.05e-01 | 100.0% | 18.1% |
| 4zoqM00 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.57 | 49.0 | 3.17e-01 | 100.0% | 77.2% |
| 1sh7A00 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.57 | 49.0 | 3.27e-01 | 100.0% | 76.5% |
| 4kq9A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 49.0 | 4.32e-01 | 100.0% | 83.7% |
| 2ovjA00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.56 | 42.0 | 3.17e-01 | 87.9% | 66.7% |
| 3l49A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 48.0 | 3.95e-01 | 100.0% | 63.6% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.55 | 40.0 | 3.15e-01 | 77.3% | 54.5% |
| 4efzB00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.55 | 47.0 | 3.10e-01 | 98.5% | 29.8% |
| 4ga4A01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.54 | 45.0 | 4.50e-01 | 90.9% | 95.5% |
| 7d3uC01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 36.0 | 3.06e-01 | 92.4% | 42.1% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 40.0 | 4.12e-01 | 80.3% | 88.7% |
| 2r0qC01 | 3.40.50.1390 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain | 0.54 | 46.0 | 3.70e-01 | 100.0% | 58.0% |
| 3kb2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 44.0 | 3.43e-01 | 100.0% | 83.0% |
| 2vk2A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 45.0 | 3.68e-01 | 100.0% | 62.6% |
| 7vufD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 46.0 | 3.26e-01 | 100.0% | 43.1% |
| 3kd4A02 | 3.10.620.30 | Alpha Beta › Roll › C8orf32 fold › | 0.52 | 42.0 | 3.23e-01 | 90.9% | 72.5% |
| 2zwrB00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.50 | 41.0 | 3.04e-01 | 98.5% | 86.0% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4845152 | 12.1.1.38 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF5597 | 0.91 | 73.0 | 4.38e-01 | 86.4% | 14.9% |
| 4878594 | 2002.1.1.63 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_35 | 0.90 | 73.0 | 4.37e-01 | 87.9% | 14.8% |
| 5058230 | 2002.1.1.151 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_53 | 0.87 | 80.0 | 5.02e-01 | 100.0% | 24.6% |
| 4308082 | 2002.1.1.94 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_42 | 0.85 | 78.0 | 4.69e-01 | 100.0% | 16.5% |
| 5005228 | 2002.1.1.58 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_39 | 0.84 | 77.0 | 4.73e-01 | 100.0% | 19.1% |
| 3269944 | 2002.1.1.94 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_42 | 0.84 | 74.0 | 4.62e-01 | 100.0% | 19.4% |
| 3278483 | 2002.1.1.12 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 | 0.82 | 76.0 | 4.52e-01 | 100.0% | 22.1% |
| 5063303 | 2002.1.1.94 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_42 | 0.82 | 76.0 | 4.66e-01 | 100.0% | 19.1% |
| 5074999 | 2002.1.1.12 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 | 0.82 | 75.0 | 4.44e-01 | 100.0% | 22.0% |
| 5065625 | 2002.1.1.12 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 | 0.82 | 75.0 | 4.45e-01 | 100.0% | 22.1% |
| 3272017 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.81 | 71.0 | 4.42e-01 | 100.0% | 18.3% |
| 1556921 | 2002.1.1.12 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 | 0.81 | 74.0 | 4.47e-01 | 100.0% | 23.0% |
| 4938216 | 2002.1.1.12 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 | 0.81 | 72.0 | 4.38e-01 | 97.0% | 31.2% |
| None | — | 0.80 | 72.0 | 4.43e-01 | 100.0% | 19.2% | |
| 4990262 | 2002.1.1.12 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 | 0.79 | 71.0 | 4.46e-01 | 100.0% | 24.5% |
| 4014203 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.77 | 67.0 | 4.25e-01 | 100.0% | 20.7% |
| 3251164 | 2002.1.1.8 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Cellulase | 0.77 | 69.0 | 4.20e-01 | 100.0% | 19.3% |
| 1397765 | 2002.1.1.18 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_10 | 0.77 | 68.0 | 4.22e-01 | 100.0% | 17.9% |
| 3288560 | 2002.1.1.8 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Cellulase | 0.74 | 66.0 | 4.10e-01 | 100.0% | 20.3% |
| 3912340 | 2002.1.1.185 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_99 | 0.73 | 66.0 | 4.05e-01 | 100.0% | 31.4% |
| 4873043 | 2002.1.1.134 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 | 0.71 | 60.0 | 4.02e-01 | 100.0% | 24.7% |
| 3178858 | 2002.1.1.274 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1, Amidohydro_3 | 0.69 | 61.0 | 3.62e-01 | 100.0% | 19.4% |
| 3944266 | 2002.1.1.76 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DeoC | 0.66 | 58.0 | 3.90e-01 | 100.0% | 25.4% |
| 4014813 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.65 | 56.0 | 3.87e-01 | 100.0% | 28.3% |
| 3604420 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.64 | 55.0 | 3.66e-01 | 100.0% | 31.2% |
| 5001496 | 2484.3.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain | 0.64 | 56.0 | 4.32e-01 | 100.0% | 80.7% |
| 3838601 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.62 | 54.0 | 3.77e-01 | 100.0% | 37.0% |
| 3524329 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.62 | 53.0 | 4.10e-01 | 100.0% | 76.9% |
| None | — | 0.60 | 52.0 | 3.62e-01 | 100.0% | 36.1% | |
| 3590097 | 3010.1.1.2 ↗ | a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C | 0.58 | 50.0 | 3.89e-01 | 100.0% | 46.5% |
| 5077038 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.58 | 49.0 | 3.41e-01 | 100.0% | 30.6% |
| 4109257 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.58 | 49.0 | 4.29e-01 | 100.0% | 89.5% |
| 4960499 | 2004.1.1.45 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MutS_V | 0.57 | 50.0 | 3.29e-01 | 100.0% | 24.6% |
| 5069523 | 2007.1.13.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase | 0.57 | 48.0 | 4.20e-01 | 100.0% | 74.1% |
| 4995618 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.56 | 46.0 | 3.36e-01 | 95.5% | 35.6% |
| 5065635 | 2007.3.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Succ_CoA_lig | 0.55 | 47.0 | 3.56e-01 | 100.0% | 37.7% |
| 3970755 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 46.0 | 4.27e-01 | 100.0% | 90.0% |
| 4932362 | 4244.1.1.5 ↗ | a/b three-layered sandwiches › EreA/ChaN-like › EreA/ChaN-like › EreA/ChaN-like › TraB_PrgY_gumN | 0.55 | 47.0 | 3.30e-01 | 100.0% | 30.0% |
| 5001814 | 3407.1.1.0 ↗ | mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.54 | 44.0 | 4.08e-01 | 92.4% | 90.6% |
| 3667528 | 2004.1.1.45 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MutS_V | 0.53 | 46.0 | 2.89e-01 | 100.0% | 18.7% |
| 4966402 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.52 | 42.0 | 3.05e-01 | 93.9% | 34.8% |
| 3307116 | 109.4.1.1280 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long | 0.52 | 43.0 | 2.69e-01 | 100.0% | 14.8% |
| 4649365 | 101.1.2.62 ↗ | alpha arrays › HTH › HTH › winged helix domain › Sigma54_DBD | 0.51 | 41.0 | 3.84e-01 | 89.4% | 71.4% |