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IMGVR_UViG_3300021379_001676-3300021379-Ga0213864_100020739
Arc-VirIMGVR_UViG_3300021379_001676-3300021379-Ga0213864_100020739
Identity
- Kingdom:
- archaea
Quality
89.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 94-154
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oceA01 | 1.10.10.650 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like | 0.84 | 61.0 | 4.83e-01 | 75.4% | 41.6% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.75 | 52.0 | 5.51e-01 | 73.8% | 81.8% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.69 | 49.0 | 4.65e-01 | 75.4% | 84.7% |
| 1f68A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.68 | 48.0 | 4.08e-01 | 75.4% | 66.0% |
| 5e16A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 44.0 | 3.49e-01 | 93.4% | 87.0% |
| 1uiuA02 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.51 | 41.0 | 2.96e-01 | 100.0% | 76.8% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3544445 | 101.26.1.0 ↗ | alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain | 0.86 | 58.0 | 6.70e-01 | 70.5% | 95.6% |
| 4384656 | 632.2.1.4 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA-like | 0.80 | 57.0 | 5.98e-01 | 75.4% | 83.6% |
| 4992678 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.69 | 48.0 | 5.02e-01 | 73.8% | 92.7% |
| 3931307 | 601.1.2.4 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_R4 | 0.62 | 44.0 | 3.42e-01 | 77.0% | 61.4% |
| 5053002 | 2002.1.1.56 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Dus | 0.60 | 49.0 | 3.11e-01 | 95.1% | 17.2% |
| 3993369 | 7516.1.1.33 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › DUF273 | 0.59 | 50.0 | 3.56e-01 | 93.4% | 46.7% |
| 4454880 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.59 | 41.0 | 3.90e-01 | 73.8% | 97.3% |
| 4153439 | 2005.1.1.25 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › HIGH_NTase1 | 0.53 | 45.0 | 2.79e-01 | 100.0% | 69.8% |
D2
medium
residues 5-86
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1g6zA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 39.0 | 4.09e-01 | 72.0% | 82.9% |
| 2dqlA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 34.0 | 3.06e-01 | 80.5% | 42.6% |
| 4c92C00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 38.0 | 3.94e-01 | 75.6% | 73.4% |
| 4m7xA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 42.0 | 4.07e-01 | 79.3% | 86.8% |
| 1dlcA03 | 2.100.10.10 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain | 0.56 | 39.0 | 2.95e-01 | 73.2% | 54.3% |
| 3htvA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 37.0 | 3.40e-01 | 70.7% | 60.4% |
| 5r0dB01 | 2.60.34.20 | Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › | 0.54 | 41.0 | 3.46e-01 | 81.7% | 74.8% |
| 5c2vB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 47.0 | 3.05e-01 | 95.1% | 48.3% |
| 3p0cA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 38.0 | 3.45e-01 | 73.2% | 69.4% |
| 1b63A01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.54 | 46.0 | 3.45e-01 | 97.6% | 88.9% |
| 4bc3A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 41.0 | 2.82e-01 | 85.4% | 88.9% |
| 2aehA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 37.0 | 3.36e-01 | 72.0% | 59.5% |
| 3fehA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 44.0 | 3.84e-01 | 92.7% | 73.4% |
| 2qm4A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.51 | 36.0 | 3.08e-01 | 76.8% | 42.7% |
| 3uaqB02 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 39.0 | 3.17e-01 | 82.9% | 82.8% |
| 2oap101 | 3.30.450.380 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.51 | 36.0 | 2.73e-01 | 74.4% | 35.9% |
| 7t8tA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 43.0 | 3.74e-01 | 95.1% | 78.6% |
| 4ffeX00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.50 | 39.0 | 3.28e-01 | 86.6% | 98.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3173646 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.71 | 33.0 | 2.57e-01 | 90.2% | 22.4% |
| 5018514 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 45.0 | 3.83e-01 | 70.7% | 92.6% |
| 3663326 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.65 | 43.0 | 3.96e-01 | 73.2% | 52.4% |
| 5001282 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.65 | 43.0 | 3.50e-01 | 91.5% | 38.6% |
| 3872511 | 220.1.1.192 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP_C | 0.61 | 47.0 | 3.89e-01 | 81.7% | 50.7% |
| 3394577 | 7039.1.1.1 ↗ | a+b complex topology › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › PCIF1_WW | 0.61 | 48.0 | 3.37e-01 | 100.0% | 29.6% |
| 2971782 | 2484.1.1.39 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Fumble | 0.60 | 49.0 | 4.40e-01 | 89.0% | 87.7% |
| 4025081 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 42.0 | 3.41e-01 | 72.0% | 41.3% |
| 3274216 | 220.1.1.49 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH | 0.59 | 41.0 | 3.53e-01 | 74.4% | 48.9% |
| 4029951 | 220.1.1.310 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29397, PF29398 | 0.58 | 41.0 | 3.48e-01 | 74.4% | 42.1% |
| 3408369 | 284.1.3.4 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK | 0.58 | 40.0 | 4.19e-01 | 70.7% | 100.0% |
| 3625974 | 284.1.3.4 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK | 0.58 | 42.0 | 4.11e-01 | 76.8% | 93.3% |
| 3955489 | 2484.1.1.211 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB | 0.58 | 38.0 | 2.81e-01 | 96.3% | 26.7% |
| 5052285 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 45.0 | 4.17e-01 | 85.4% | 70.5% |
| 3609310 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 42.0 | 3.61e-01 | 79.3% | 88.1% |
| 3404871 | 719.1.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain | 0.57 | 39.0 | 3.59e-01 | 72.0% | 60.0% |
| 3706905 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 41.0 | 4.10e-01 | 79.3% | 97.6% |
| 3255028 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.56 | 52.0 | 4.00e-01 | 100.0% | 80.0% |
| 4951444 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.56 | 44.0 | 3.76e-01 | 91.5% | 65.3% |
| 3685407 | 220.1.1.215 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_35 | 0.55 | 43.0 | 3.73e-01 | 85.4% | 56.9% |
| 5049116 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 41.0 | 3.20e-01 | 80.5% | 72.2% |
| 5041307 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 48.0 | 3.34e-01 | 96.3% | 60.0% |
| 3603768 | 2484.1.1.24 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 45.0 | 3.83e-01 | 92.7% | 100.0% |
| 4116094 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.54 | 44.0 | 4.02e-01 | 92.7% | 100.0% |
| 3764969 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 37.0 | 3.45e-01 | 72.0% | 60.6% |
| 4411984 | 2484.1.1.114 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C | 0.53 | 45.0 | 3.60e-01 | 97.6% | 81.1% |
| 3497856 | 2484.1.1.114 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C | 0.53 | 40.0 | 3.28e-01 | 81.7% | 90.1% |
| 3930705 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.53 | 39.0 | 3.65e-01 | 76.8% | 72.0% |
| 3582821 | 220.1.1.5 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PID | 0.53 | 47.0 | 4.55e-01 | 97.6% | 100.0% |
| 4457428 | 2.4.1.11 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 | 0.52 | 41.0 | 3.73e-01 | 86.6% | 62.7% |
| 3607901 | 2004.1.1.427 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N | 0.52 | 44.0 | 2.94e-01 | 100.0% | 30.1% |
| 3601605 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.52 | 39.0 | 2.76e-01 | 79.3% | 80.6% |
| 3792405 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.51 | 46.0 | 2.82e-01 | 98.8% | 20.4% |
| 4253165 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.51 | 35.0 | 3.00e-01 | 86.6% | 42.1% |
| 5060242 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 40.0 | 3.82e-01 | 87.8% | 87.0% |
| 3972580 | 331.1.1.3 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AlkA_N | 0.51 | 30.0 | 3.09e-01 | 84.1% | 61.3% |