←Back to structures
IMGVR_UViG_3300021379_002519-3300021379-Ga0213864_100077601
Arc-VirIMGVR_UViG_3300021379_002519-3300021379-Ga0213864_100077601
Identity
- Kingdom:
- archaea
Quality
92.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 672-734
Domain cluster:
rep: IMGVR_UViG_3300020453_000736-3300020453-Ga0211550_100036151__D203-260
D2
medium
residues 4-84
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xt9A00 | 3.40.395.10 | Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A | 0.53 | 39.0 | 2.96e-01 | 80.2% | 48.6% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1501293 | 2004.1.1.101 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MeaB | 0.81 | 72.0 | 4.85e-01 | 97.5% | 28.0% |
| 3322779 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 39.0 | 2.53e-01 | 70.4% | 97.3% |
| None | — | 0.57 | 40.0 | 2.81e-01 | 74.1% | 49.2% | |
| 3454922 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.55 | 34.0 | 3.30e-01 | 85.2% | 53.3% |
| 3534921 | 5001.1.1.54 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srbc | 0.55 | 44.0 | 3.15e-01 | 87.7% | 61.9% |
| 3435952 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.53 | 44.0 | 3.13e-01 | 93.8% | 77.4% |
D3
medium
residues 93-214
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nfvA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.75 | 46.0 | 4.05e-01 | 94.3% | 44.4% |
| 1jgcA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.75 | 45.0 | 4.03e-01 | 92.6% | 46.3% |
| 1lkoA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.74 | 42.0 | 3.96e-01 | 100.0% | 47.6% |
| 3r2kA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.74 | 44.0 | 4.00e-01 | 92.6% | 47.4% |
| 4cmyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.72 | 44.0 | 3.92e-01 | 91.8% | 46.0% |
| 3e6sA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.72 | 43.0 | 3.91e-01 | 89.3% | 46.5% |
| 1s3qG00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.71 | 44.0 | 3.94e-01 | 92.6% | 47.2% |
| 1lb3A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.68 | 44.0 | 3.88e-01 | 92.6% | 47.3% |
| 1e2aA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.66 | 43.0 | 4.76e-01 | 97.5% | 79.4% |
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.65 | 44.0 | 4.80e-01 | 88.5% | 81.6% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.65 | 43.0 | 4.68e-01 | 95.9% | 80.4% |
| 3pwfA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 49.0 | 4.78e-01 | 88.5% | 78.6% |
| 1j30A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.59 | 47.0 | 4.49e-01 | 88.5% | 71.6% |
| 3tc1B00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.57 | 47.0 | 3.51e-01 | 87.7% | 82.6% |
| 1lf6A02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.56 | 46.0 | 3.16e-01 | 85.2% | 60.5% |
| 3v5uA01 | 6.10.280.80 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region | 0.55 | 32.0 | 3.79e-01 | 100.0% | 88.2% |
| 4hfkB00 | 1.20.120.1620 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.55 | 39.0 | 4.38e-01 | 88.5% | 91.8% |
| 2fupA00 | 1.20.58.300 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like | 0.53 | 43.0 | 4.24e-01 | 94.3% | 81.1% |
| 1oq4A00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.51 | 48.0 | 3.36e-01 | 100.0% | 85.5% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4184822 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.96 | 92.0 | 5.56e-01 | 100.0% | 18.8% |
| 1411937 | 150.1.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin | 0.72 | 44.0 | 3.92e-01 | 91.8% | 46.0% |
| 5056592 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 52.0 | 3.70e-01 | 91.0% | 59.4% |
| 3609216 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 48.0 | 2.97e-01 | 91.0% | 34.3% |
| 5058485 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.56 | 50.0 | 5.15e-01 | 97.5% | 99.1% |
| 3612915 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.54 | 38.0 | 4.07e-01 | 88.5% | 83.8% |
| 3860669 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 38.0 | 3.14e-01 | 86.9% | 43.4% |
| 4467862 | 603.5.1.0 ↗ | alpha bundles › STAT-like › FlgN-like › FlgN-like | 0.53 | 45.0 | 4.22e-01 | 97.5% | 73.8% |
| 3338686 | 2002.1.1.17 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PEPcase | 0.51 | 44.0 | 2.90e-01 | 91.8% | 31.6% |
| 4029165 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.51 | 43.0 | 3.01e-01 | 94.3% | 90.7% |
| 5066987 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.51 | 42.0 | 4.14e-01 | 96.7% | 82.2% |
D4
medium
residues 237-327_361-394_407-423
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01642.29 best | MM_CoA_mutase | 61.9 | 5.70e-17 | 100.0% | 26.6% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e1cA01 | 3.20.20.240 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Methylmalonyl-CoA mutase | 0.91 | 88.0 | 5.72e-01 | 100.0% | 30.7% |
| 1reqB01 | 3.20.20.240 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Methylmalonyl-CoA mutase | 0.71 | 63.0 | 4.36e-01 | 100.0% | 30.4% |
| 1ccwB01 | 3.20.20.240 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Methylmalonyl-CoA mutase | 0.71 | 66.0 | 4.63e-01 | 100.0% | 37.9% |
| 2b3zA02 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.59 | 38.0 | 3.25e-01 | 99.3% | 40.9% |
| 2ejaA00 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.57 | 51.0 | 3.89e-01 | 99.3% | 87.2% |
| 4l6wB01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.55 | 43.0 | 4.01e-01 | 100.0% | 67.2% |
| 3r2uA02 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.54 | 30.0 | 3.75e-01 | 82.4% | 90.5% |
| 1wx0A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 47.0 | 4.14e-01 | 100.0% | 64.0% |
| 3p94A00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.54 | 49.0 | 4.35e-01 | 100.0% | 81.4% |
| 1l6wA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 47.0 | 4.04e-01 | 100.0% | 61.4% |
| 4zi5A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 46.0 | 3.86e-01 | 94.4% | 88.3% |
| 3no3A00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.53 | 47.0 | 4.02e-01 | 100.0% | 73.5% |
| 5c5dD00 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 40.0 | 3.88e-01 | 82.4% | 74.2% |
| 2hsjD00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.50 | 46.0 | 4.00e-01 | 100.0% | 80.4% |
| 2uv8A01 | 3.90.25.70 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › | 0.50 | 26.0 | 3.07e-01 | 89.4% | 71.0% |
| 1on3B01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.50 | 45.0 | 3.74e-01 | 100.0% | 58.3% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4184822 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 1.00 | 98.0 | 6.02e-01 | 100.0% | 28.5% |
| 4968033 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.96 | 94.0 | 5.86e-01 | 100.0% | 29.2% |
| 4963790 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.92 | 89.0 | 5.67e-01 | 100.0% | 28.6% |
| 3958236 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.91 | 88.0 | 5.64e-01 | 100.0% | 28.8% |
| 4133148 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.91 | 88.0 | 5.59e-01 | 100.0% | 27.8% |
| 4591497 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.91 | 88.0 | 5.79e-01 | 100.0% | 32.7% |
| 4936793 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.87 | 84.0 | 5.37e-01 | 100.0% | 28.6% |
| 3282757 | 2002.1.1.143 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Met_asp_mut_E | 0.72 | 67.0 | 4.74e-01 | 100.0% | 37.3% |
| 8656 | 2002.1.1.143 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Met_asp_mut_E | 0.71 | 66.0 | 4.46e-01 | 100.0% | 32.7% |
| 1685312 | 2007.1.11.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains › Fucose_iso_N1 | 0.57 | 46.0 | 4.26e-01 | 85.2% | 88.7% |
| 4999467 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.56 | 50.0 | 3.96e-01 | 100.0% | 68.5% |
| 3930246 | 2004.1.1.110 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ORC2 | 0.53 | 41.0 | 3.78e-01 | 81.7% | 66.5% |
| 3613094 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.53 | 41.0 | 3.16e-01 | 83.1% | 92.9% |
| 4947091 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.52 | 46.0 | 4.06e-01 | 96.5% | 69.5% |
| 5058831 | 2007.1.9.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) › AIRC | 0.50 | 41.0 | 4.05e-01 | 85.9% | 88.5% |
| 4335576 | 2006.1.1.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase | 0.50 | 40.0 | 3.54e-01 | 83.8% | 77.6% |
D5
medium
residues 395-406_424-530_578-646
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01642.29 best | MM_CoA_mutase | 76.5 | 2.20e-21 | 63.3% | 22.5% |
| PF01642.29 | MM_CoA_mutase | 35.8 | 4.50e-09 | 37.2% | 13.2% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e1cA01 | 3.20.20.240 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Methylmalonyl-CoA mutase | 0.96 | 94.0 | 6.50e-01 | 100.0% | 48.3% |
| 1reqB01 | 3.20.20.240 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Methylmalonyl-CoA mutase | 0.93 | 90.0 | 6.59e-01 | 100.0% | 57.7% |
| 1f6yA00 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.57 | 36.0 | 3.28e-01 | 70.2% | 46.5% |
| 7tm7B01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.57 | 41.0 | 3.05e-01 | 73.4% | 70.7% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4184822 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 1.00 | 99.0 | 6.39e-01 | 100.0% | 38.5% |
| 4968033 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.99 | 98.0 | 6.44e-01 | 100.0% | 41.0% |
| 4133148 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.97 | 96.0 | 6.41e-01 | 100.0% | 43.8% |
| 4963790 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.97 | 95.0 | 6.44e-01 | 100.0% | 46.3% |
| 4369287 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.97 | 95.0 | 6.50e-01 | 100.0% | 46.9% |
| 3958236 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.97 | 95.0 | 6.45e-01 | 100.0% | 45.4% |
| 4591497 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.97 | 95.0 | 6.64e-01 | 100.0% | 53.1% |
| 4936793 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.96 | 94.0 | 6.33e-01 | 100.0% | 44.4% |
| 3949726 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.93 | 91.0 | 6.41e-01 | 100.0% | 52.0% |
| 3951770 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.93 | 91.0 | 6.50e-01 | 100.0% | 54.8% |
| 4042297 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.93 | 90.0 | 6.48e-01 | 100.0% | 54.2% |