Back to structures

IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_1000007235

Arc-Vir

IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_1000007235

Quality

92.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-58_84-123
PDB
D2 medium residues 59-83_124-159
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hczX02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.71 53.0 4.49e-01 82.0% 91.3%
4g1lA01 2.70.20.50 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Viral matrix protein, N-terminal domain 0.68 54.0 4.03e-01 88.5% 41.7%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 60.0 5.92e-01 100.0% 95.4%
3dteA03 3.30.450.130 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › irre protein 0.67 51.0 4.58e-01 83.6% 95.5%
3nswA00 2.40.50.780 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 58.0 4.90e-01 100.0% 67.9%
2rcnA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 57.0 5.78e-01 100.0% 95.1%
1u0lA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 60.0 5.94e-01 100.0% 100.0%
2wg5F02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 55.0 5.69e-01 98.4% 100.0%
2je6I02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 57.0 5.05e-01 100.0% 89.8%
2k5qA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.62 53.0 4.54e-01 100.0% 70.5%
1uwvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 51.0 4.86e-01 100.0% 78.1%
2k31A00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.61 53.0 4.03e-01 100.0% 82.6%
6g1nD01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 47.0 4.24e-01 83.6% 98.8%
2wfwA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 49.0 5.02e-01 100.0% 98.3%
6a97C01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.60 49.0 3.88e-01 91.8% 90.8%
3d30A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.60 45.0 3.98e-01 82.0% 96.8%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.59 44.0 4.59e-01 96.7% 100.0%
4jcwA02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.59 44.0 3.95e-01 82.0% 96.7%
3f8tA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 50.0 4.64e-01 100.0% 95.0%
2vhjA02 2.30.270.20 Mainly Beta › Roll › duf1285 protein fold › 0.59 41.0 4.16e-01 75.4% 95.2%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.11e-01 98.4% 69.6%
3j7aF02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.58 44.0 4.74e-01 95.1% 100.0%
1ckmA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 48.0 4.38e-01 100.0% 67.5%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.57 49.0 3.68e-01 100.0% 51.2%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 49.0 3.96e-01 100.0% 79.5%
3ntkB01 2.40.50.790 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 48.0 4.39e-01 100.0% 86.0%
3bdlA03 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 48.0 3.90e-01 100.0% 61.6%
1jt8A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 47.0 4.08e-01 100.0% 63.7%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.56 41.0 4.36e-01 95.1% 100.0%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 47.0 4.40e-01 100.0% 88.7%
2dd7A00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.55 47.0 3.30e-01 100.0% 37.4%
2qgqA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 47.0 4.73e-01 95.1% 98.3%
1zubA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.55 45.0 3.81e-01 93.4% 66.1%
6rjiA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 42.0 4.45e-01 98.4% 100.0%
4qmaA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 47.0 3.63e-01 100.0% 90.9%
4hfsA00 2.60.120.1270 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.24e-01 100.0% 72.9%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 40.0 3.18e-01 85.2% 83.0%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 44.0 3.03e-01 100.0% 29.2%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 46.0 3.20e-01 100.0% 76.4%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.53 44.0 3.10e-01 95.1% 30.0%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 44.0 3.03e-01 100.0% 40.0%
6melB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 44.0 3.39e-01 100.0% 71.0%
2qdeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 41.0 3.34e-01 93.4% 65.4%
3d2uE01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.52 43.0 3.18e-01 100.0% 62.2%
2yzyA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 44.0 3.32e-01 100.0% 69.3%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2723695 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 43.0 4.95e-01 91.8% 68.9%
3212560 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 72.0 6.84e-01 100.0% 97.1%
3891388 2.1.1.188 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSDE1 0.76 69.0 5.99e-01 100.0% 88.9%
4972486 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 62.0 6.48e-01 95.1% 100.0%
3619972 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 66.0 6.35e-01 98.4% 97.1%
4946166 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 64.0 6.54e-01 100.0% 96.7%
3383283 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.71 64.0 6.28e-01 100.0% 96.9%
3704389 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 62.0 5.55e-01 100.0% 91.8%
4957484 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 58.0 4.99e-01 100.0% 58.0%
3416726 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 57.0 4.72e-01 95.1% 73.0%
3719738 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 52.0 4.80e-01 83.6% 98.8%
338 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.68 60.0 5.92e-01 100.0% 95.4%
3394961 2.1.1.188 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSDE1 0.68 59.0 5.35e-01 95.1% 92.5%
3235867 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 62.0 4.78e-01 100.0% 73.4%
4218525 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 58.0 5.69e-01 93.4% 93.8%
4566369 2.1.1.70 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.67 58.0 4.77e-01 100.0% 53.6%
None 0.67 49.0 3.02e-01 88.5% 13.2%
4950506 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 56.0 4.73e-01 100.0% 55.2%
4985312 2.1.1.70 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.67 56.0 4.53e-01 100.0% 48.3%
350 2.1.1.73 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N 0.67 60.0 5.87e-01 100.0% 97.0%
4053768 2.1.1.70 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.66 56.0 4.59e-01 100.0% 51.3%
3336204 2.1.1.70 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.65 56.0 4.50e-01 100.0% 49.2%
4942590 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 57.0 5.35e-01 98.4% 96.0%
3938729 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 49.0 3.21e-01 83.6% 96.1%
5060637 2.1.1.70 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.65 57.0 4.54e-01 100.0% 49.6%
4086268 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.65 51.0 4.53e-01 90.2% 58.9%
4103220 2.1.1.11 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.65 58.0 5.40e-01 100.0% 88.0%
4993659 2.1.1.70 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.64 54.0 4.31e-01 100.0% 45.4%
3603885 2.1.1.70 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.64 55.0 4.13e-01 100.0% 39.3%
3713834 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 49.0 4.11e-01 85.2% 86.4%
365199 2.1.1.70 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.64 54.0 5.07e-01 100.0% 76.6%
1755798 2.1.1.70 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.64 54.0 5.36e-01 100.0% 93.7%
4393615 2.1.1.115 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PabTrmU54_TRAM_dom 0.64 52.0 5.14e-01 100.0% 86.2%
5062547 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.63 53.0 3.34e-01 95.1% 18.6%
4943419 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 53.0 5.41e-01 98.4% 93.3%
3965727 2.1.1.78 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PCB_OB 0.63 55.0 4.65e-01 100.0% 68.6%
3457922 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.63 54.0 4.00e-01 96.7% 47.5%
4981339 2.1.1.70 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.63 53.0 4.39e-01 100.0% 51.3%
3435395 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.63 53.0 3.69e-01 95.1% 34.1%
3621264 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 52.0 5.29e-01 93.4% 96.7%
4552597 2.1.1.11 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.62 54.0 4.92e-01 100.0% 78.6%
4965926 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.62 54.0 5.21e-01 100.0% 84.3%
4562052 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.62 53.0 5.09e-01 96.7% 94.3%
4957842 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.62 52.0 5.26e-01 96.7% 93.3%
3369818 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.62 48.0 4.77e-01 95.1% 83.1%
4582532 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 51.0 4.70e-01 93.4% 82.5%
3706918 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 47.0 4.29e-01 85.2% 80.7%
4119295 2.1.1.83 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.61 54.0 4.85e-01 100.0% 84.7%
4944447 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 53.0 5.13e-01 98.4% 92.6%
3386881 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.61 51.0 4.50e-01 93.4% 71.1%
5052147 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 53.0 5.11e-01 98.4% 90.0%
4931163 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.61 50.0 5.13e-01 96.7% 93.3%
4162174 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.61 53.0 5.03e-01 100.0% 93.2%
5071787 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 54.0 4.21e-01 100.0% 91.5%
3874008 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 51.0 4.98e-01 100.0% 95.7%
3474800 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.60 51.0 3.65e-01 100.0% 55.9%
4161370 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.59 50.0 5.09e-01 96.7% 95.0%
4066100 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.59 49.0 5.02e-01 95.1% 93.3%
3810878 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.59 43.0 2.73e-01 80.3% 99.4%
4083610 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.58 50.0 4.94e-01 95.1% 96.9%
3261195 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.58 50.0 3.75e-01 100.0% 59.4%
3640969 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 44.0 2.79e-01 83.6% 92.6%
4592273 2.1.1.84 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N 0.58 48.0 4.02e-01 100.0% 54.2%
4250218 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.57 47.0 4.69e-01 95.1% 96.9%
5041307 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 46.0 3.17e-01 98.4% 25.0%
3535276 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.56 48.0 4.02e-01 100.0% 72.7%
3974613 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 46.0 4.32e-01 100.0% 87.5%
3873657 10.2.1.5 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.55 41.0 2.93e-01 83.6% 63.7%
5001384 304.103.1.1 a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.55 45.0 3.10e-01 100.0% 50.6%
3955201 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.54 49.0 3.47e-01 100.0% 64.0%
3451989 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 43.0 2.86e-01 100.0% 29.4%
3509389 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 36.0 2.93e-01 73.8% 70.8%
3081033 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.52 42.0 3.48e-01 100.0% 78.0%