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IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_1000007257

Arc-Vir

IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_1000007257

Identity

Kingdom:
archaea

Quality

80.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-79
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lrqB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 43.0 4.05e-01 76.2% 80.0%
3ol2B02 3.30.1680.10 Alpha Beta › 2-Layer Sandwich › ligand-binding face of the semaphorins, domain 2 › ligand-binding face of the semaphorins, domain 2 0.56 38.0 4.17e-01 71.4% 93.8%
2cklA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 41.0 3.66e-01 90.5% 73.5%
7r0kA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.51 38.0 2.88e-01 82.5% 90.4%
2anvA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.51 35.0 2.81e-01 74.6% 76.7%
1t8sA02 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.50 38.0 2.57e-01 88.9% 63.2%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3525031 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 34.0 3.66e-01 95.2% 54.5%
3788976 2004.1.1.14 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.65 56.0 3.25e-01 96.8% 18.1%
3409224 355.1.1.2 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › PSI 0.62 46.0 4.49e-01 84.1% 70.0%
3306475 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.62 44.0 4.33e-01 76.2% 79.7%
3900977 355.1.1.2 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › PSI 0.59 42.0 4.33e-01 77.8% 83.3%
3476104 2004.1.1.41 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK 0.58 44.0 3.08e-01 82.5% 57.7%
3940154 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.56 39.0 2.42e-01 73.0% 24.5%
3873702 105.2.1.0 ↗ alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C 0.55 37.0 2.87e-01 71.4% 30.7%
5000735 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 3.28e-01 92.1% 35.4%
4213797 2004.1.1.41 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK 0.54 42.0 2.99e-01 87.3% 53.5%
3869795 2004.1.1.41 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK 0.54 40.0 2.89e-01 82.5% 59.5%
4466102 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.53 42.0 3.15e-01 90.5% 35.9%
4241167 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.53 37.0 2.75e-01 76.2% 27.6%
3225453 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.52 39.0 3.82e-01 92.1% 74.3%
5070884 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 41.0 4.01e-01 90.5% 87.1%
4403519 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.14e-01 92.1% 37.1%
3719535 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 42.0 2.67e-01 100.0% 20.5%
4646072 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.51 40.0 3.06e-01 90.5% 35.9%
4645846 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.51 41.0 3.09e-01 92.1% 37.1%
3393334 386.1.1.51 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › CEP104_ZnF 0.51 38.0 3.19e-01 84.1% 88.8%
5042462 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.51 40.0 3.07e-01 90.5% 37.0%
3782920 376.1.1.43 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PRT6_C 0.51 43.0 3.49e-01 100.0% 66.7%
4546356 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 40.0 3.72e-01 92.1% 74.1%
5049590 1015.1.1.2 ↗ alpha complex topology › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Caroten_synth 0.51 37.0 2.47e-01 81.0% 36.3%
4507638 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.50 40.0 3.06e-01 92.1% 38.2%
4344487 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.50 40.0 3.04e-01 92.1% 38.2%