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IMGVR_UViG_3300021467_000205-3300021467-Ga0190334_100023517

Arc-Vir

IMGVR_UViG_3300021467_000205-3300021467-Ga0190334_100023517

Quality

85.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-58
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10668.15 best Phage_terminase 23.8 4.00e-05 89.7% 65.7%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 58.0 5.70e-01 74.1% 66.7%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.81 57.0 6.39e-01 77.6% 97.7%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.80 62.0 3.92e-01 81.0% 19.5%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.80 58.0 6.18e-01 75.9% 94.0%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 54.0 4.81e-01 70.7% 51.2%
2cu7A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 56.0 6.00e-01 75.9% 88.0%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 53.0 5.16e-01 72.4% 64.1%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 54.0 5.32e-01 72.4% 68.9%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.77 55.0 4.05e-01 75.9% 30.3%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 54.0 5.18e-01 77.6% 67.7%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 60.0 5.49e-01 91.4% 77.3%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 5.03e-01 79.3% 71.7%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.72 52.0 4.45e-01 79.3% 47.9%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 59.0 6.09e-01 89.7% 96.3%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 56.0 5.41e-01 87.9% 76.1%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 54.0 5.76e-01 84.5% 96.0%
3u1dB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 58.0 4.42e-01 93.1% 83.2%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 5.72e-01 79.3% 100.0%
3n05A03 1.10.10.1510 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 59.0 5.41e-01 91.4% 84.2%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 52.0 5.55e-01 79.3% 93.8%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 58.0 5.56e-01 91.4% 89.6%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 55.0 4.75e-01 91.4% 65.3%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 5.09e-01 94.8% 82.5%
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 60.0 5.98e-01 100.0% 100.0%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 52.0 5.07e-01 86.2% 100.0%
4g6qA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 4.74e-01 91.4% 79.3%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 4.90e-01 89.7% 95.9%
2jrtA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 4.24e-01 87.9% 70.9%
3mw6B00 1.10.1710.10 Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain 0.61 50.0 4.40e-01 98.3% 68.1%
4onsB00 6.10.250.2780 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 47.0 4.75e-01 100.0% 91.1%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.60 46.0 4.04e-01 89.7% 57.7%
4usaA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.59 47.0 3.90e-01 96.6% 49.6%
4irnA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.58 47.0 3.88e-01 98.3% 70.6%
1wgfA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.57 37.0 3.81e-01 70.7% 71.7%
5vyoD00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 46.0 3.28e-01 94.8% 33.5%
3fewX02 3.30.1310.40 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › 0.55 44.0 3.75e-01 87.9% 77.9%
1ichA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.54 36.0 3.19e-01 72.4% 44.8%
5xe7A01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.54 46.0 3.56e-01 100.0% 100.0%
2gytA01 1.10.287.2070 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 39.0 3.82e-01 87.9% 69.0%
2khvA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.54 45.0 3.96e-01 93.1% 63.5%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4665755 101.1.1.470 alpha arrays › HTH › HTH › Three-helical HTH › Phage_terminase 0.86 69.0 7.35e-01 84.5% 100.0%
4583223 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.83 61.0 6.26e-01 77.6% 83.6%
4944726 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 57.0 5.67e-01 74.1% 70.0%
3943148 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.82 59.0 6.24e-01 75.9% 88.0%
3967026 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 57.0 5.16e-01 74.1% 56.0%
3973360 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 56.0 5.29e-01 74.1% 60.0%
3967748 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 56.0 4.90e-01 74.1% 49.4%
3951829 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.80 55.0 4.79e-01 72.4% 48.2%
4165188 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.80 56.0 4.87e-01 72.4% 49.4%
3617914 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 69.0 6.55e-01 98.3% 85.7%
4497189 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.79 55.0 5.32e-01 72.4% 64.6%
3206332 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 61.0 5.89e-01 82.8% 73.8%
3205204 101.1.1.67 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.79 57.0 5.94e-01 77.6% 83.3%
3243706 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.78 70.0 6.61e-01 100.0% 88.4%
3963308 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.78 61.0 5.20e-01 84.5% 53.3%
3965313 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.78 61.0 6.27e-01 84.5% 87.3%
3483711 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 58.0 6.00e-01 79.3% 89.1%
4067934 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.78 57.0 4.88e-01 77.6% 51.1%
3973709 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.77 57.0 4.60e-01 79.3% 42.9%
4119313 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.77 58.0 5.92e-01 81.0% 87.3%
3620214 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 60.0 5.06e-01 84.5% 53.7%
3486933 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 68.0 6.13e-01 100.0% 77.5%
3632013 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 56.0 5.89e-01 77.6% 92.0%
3197445 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 58.0 5.98e-01 82.8% 85.5%
3787785 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 54.0 5.92e-01 77.6% 97.8%
3972713 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.76 56.0 4.70e-01 79.3% 47.4%
4303963 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.76 55.0 5.01e-01 77.6% 58.7%
3757222 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.76 65.0 6.67e-01 96.6% 100.0%
3790320 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.76 66.0 6.43e-01 98.3% 95.4%
2464007 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.75 55.0 5.32e-01 79.3% 68.2%
3687749 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.75 63.0 6.05e-01 91.4% 89.2%
4244028 101.1.1.107 alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.75 52.0 5.23e-01 72.4% 70.0%
4194508 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 59.0 6.03e-01 93.1% 89.1%
3900411 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.75 64.0 5.62e-01 98.3% 68.5%
3602804 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 57.0 6.08e-01 89.7% 96.0%
3589532 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 52.0 4.33e-01 72.4% 42.9%
5023952 101.1.2.888 alpha arrays › HTH › HTH › winged helix domain › Sigma70_r4_2 0.75 61.0 5.72e-01 89.7% 78.6%
4019403 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 61.0 5.93e-01 91.4% 83.1%
3243688 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.75 63.0 6.53e-01 93.1% 98.2%
3834548 101.1.3.12 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › PF26138 0.74 59.0 5.65e-01 84.5% 76.9%
4937493 101.1.1.25 alpha arrays › HTH › HTH › Three-helical HTH › DUF433 0.74 58.0 5.75e-01 84.5% 91.7%
4486973 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.74 53.0 4.67e-01 77.6% 51.8%
3668069 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.74 65.0 6.44e-01 98.3% 100.0%
3929697 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.74 64.0 5.30e-01 98.3% 56.2%
3318615 101.1.1.272 alpha arrays › HTH › HTH › Three-helical HTH › DUF7952 0.73 60.0 6.20e-01 89.7% 98.2%
4003410 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.73 64.0 5.06e-01 98.3% 52.5%
4456068 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.73 57.0 4.78e-01 84.5% 89.0%
3163616 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.73 54.0 4.54e-01 77.6% 89.4%
4159655 101.1.2.530 alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 0.73 60.0 5.67e-01 91.4% 88.6%
4618625 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 50.0 4.07e-01 70.7% 40.0%
4031508 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 53.0 5.64e-01 81.0% 94.0%
3785702 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.72 63.0 5.92e-01 98.3% 84.3%
4027833 101.1.1.69 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_7 0.71 62.0 5.54e-01 96.6% 72.5%
3793382 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.71 58.0 4.83e-01 89.7% 52.0%
4989929 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 51.0 5.62e-01 82.8% 97.8%
1762219 101.1.2.61 alpha arrays › HTH › HTH › winged helix domain › Sigma70_r4 0.71 59.0 6.07e-01 94.8% 94.6%
3941670 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.70 60.0 5.51e-01 96.6% 86.7%
3543272 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.69 50.0 5.37e-01 89.7% 100.0%
3244407 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.69 59.0 5.87e-01 98.3% 100.0%
4966784 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 53.0 5.32e-01 86.2% 83.3%
4558962 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.69 56.0 5.76e-01 94.8% 94.5%
4863786 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.68 57.0 5.91e-01 96.6% 98.2%
5011614 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.68 54.0 5.20e-01 87.9% 76.9%
3281824 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.68 54.0 5.53e-01 100.0% 96.4%
4271117 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.68 60.0 5.28e-01 100.0% 95.3%
1695424 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.67 50.0 4.75e-01 87.9% 67.1%
3761218 101.28.1.0 alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins 0.65 46.0 4.92e-01 79.3% 97.8%
3864536 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 45.0 4.80e-01 84.5% 95.6%
5054952 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.63 50.0 5.04e-01 100.0% 88.3%
4683234 3455.1.1.0 alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.60 45.0 3.95e-01 82.8% 72.2%