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IMGVR_UViG_3300021467_000205-3300021467-Ga0190334_100023522
Arc-VirIMGVR_UViG_3300021467_000205-3300021467-Ga0190334_100023522
Identity
- Kingdom:
- archaea
Quality
92.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-60
Domain cluster:
rep: KT381865.1__ALF02123.1__vBPeaSP1_032__00032__D3-52
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06252.18 best | GemA | 32.1 | 2.70e-07 | 64.9% | 29.4% |
D2
high
residues 72-141
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06252.18 best | GemA | 55.0 | 2.10e-14 | 97.1% | 58.0% |
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.68 | 59.0 | 5.44e-01 | 95.7% | 76.4% |
| 2ewfA02 | 1.20.1270.310 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.63 | 55.0 | 5.28e-01 | 95.7% | 90.1% |
| 2qnlA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.63 | 56.0 | 4.26e-01 | 98.6% | 95.7% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.62 | 36.0 | 3.74e-01 | 82.9% | 61.3% |
| 4cc9B00 | 1.20.5.4730 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.62 | 49.0 | 4.43e-01 | 90.0% | 62.2% |
| 3d2eA06 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.61 | 53.0 | 4.50e-01 | 95.7% | 69.9% |
| 2b3tA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.61 | 47.0 | 4.49e-01 | 85.7% | 78.6% |
| 3cqxC00 | 1.20.58.890 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 36.0 | 3.43e-01 | 80.0% | 50.6% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.60 | 47.0 | 4.87e-01 | 85.7% | 95.5% |
| 4xvxA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.59 | 50.0 | 3.96e-01 | 94.3% | 63.9% |
| 5c9eB01 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.58 | 41.0 | 3.85e-01 | 74.3% | 100.0% |
| 3bkhA01 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.57 | 44.0 | 4.16e-01 | 87.1% | 88.4% |
| 4i5jA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.56 | 47.0 | 3.71e-01 | 97.1% | 50.3% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.56 | 42.0 | 3.98e-01 | 100.0% | 65.9% |
| 7w9wA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.55 | 45.0 | 3.15e-01 | 94.3% | 92.4% |
| 1qmyA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.55 | 41.0 | 3.28e-01 | 82.9% | 41.0% |
| 2gf4A00 | 1.20.1270.110 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 | 0.55 | 44.0 | 4.20e-01 | 94.3% | 76.1% |
| 1vplA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 42.0 | 2.92e-01 | 82.9% | 29.4% |
| 1o5wB03 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.55 | 41.0 | 3.79e-01 | 91.4% | 62.0% |
| 3o8jA02 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.54 | 41.0 | 3.73e-01 | 90.0% | 59.6% |
| 2m0rA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 46.0 | 4.09e-01 | 100.0% | 65.4% |
| 1u04A03 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 46.0 | 3.45e-01 | 95.7% | 86.5% |
| 5u1aL00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 44.0 | 3.44e-01 | 95.7% | 81.3% |
| 1u84A00 | 1.10.340.20 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain | 0.53 | 34.0 | 3.28e-01 | 72.9% | 55.6% |
| 4lqxA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.53 | 42.0 | 2.87e-01 | 91.4% | 52.1% |
| 1mhyG02 | 1.20.1280.30 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 | 0.53 | 35.0 | 3.47e-01 | 71.4% | 64.4% |
| 6z01B01 | 1.10.10.41 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 | 0.52 | 35.0 | 3.41e-01 | 74.3% | 62.8% |
| 4px7A00 | 1.20.144.10 | Mainly Alpha › Up-down Bundle › Vanadium-containing Chloroperoxidase; domain 1 › Phosphatidic acid phosphatase type 2/haloperoxidase | 0.52 | 43.0 | 3.01e-01 | 97.1% | 74.1% |
| 6ocxA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.51 | 44.0 | 3.46e-01 | 98.6% | 43.4% |
| 3rcyB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 35.0 | 2.91e-01 | 72.9% | 47.5% |
| 3msuB03 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.51 | 41.0 | 3.61e-01 | 91.4% | 62.7% |
| 2lrmA00 | 1.10.890.30 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein | 0.51 | 42.0 | 4.00e-01 | 94.3% | 97.6% |
| 4ghnA01 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.51 | 40.0 | 3.54e-01 | 90.0% | 78.4% |
| 1d2tA00 | 1.20.144.10 | Mainly Alpha › Up-down Bundle › Vanadium-containing Chloroperoxidase; domain 1 › Phosphatidic acid phosphatase type 2/haloperoxidase | 0.51 | 44.0 | 3.18e-01 | 100.0% | 72.1% |
| 2k8oA00 | 1.20.5.2120 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.50 | 38.0 | 4.02e-01 | 94.3% | 100.0% |
| 3umoA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.50 | 43.0 | 2.83e-01 | 97.1% | 32.7% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4869998 | 829.1.1.0 ↗ | a+b duplicates or obligate multimers › NinB › NinB › NinB | 0.81 | 69.0 | 6.94e-01 | 91.4% | 91.4% |
| 4982953 | 2488.1.1.1 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase | 0.73 | 68.0 | 4.55e-01 | 100.0% | 67.5% |
| 4993069 | 632.12.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Vng1086c-like › Vng1086c-like › UPF0058 | 0.71 | 58.0 | 6.07e-01 | 95.7% | 96.8% |
| 4451187 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.64 | 54.0 | 5.63e-01 | 98.6% | 100.0% |
| 3264889 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.63 | 56.0 | 5.24e-01 | 95.7% | 84.7% |
| 3185258 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.62 | 56.0 | 5.19e-01 | 100.0% | 94.4% |
| 4981740 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.62 | 53.0 | 5.50e-01 | 98.6% | 100.0% |
| 3860473 | 4044.1.1.12 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › RH_dom | 0.62 | 55.0 | 4.85e-01 | 100.0% | 88.6% |
| 4021621 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.61 | 55.0 | 4.80e-01 | 100.0% | 83.8% |
| 3730162 | 103.4.1.5 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 | 0.59 | 52.0 | 4.76e-01 | 100.0% | 90.5% |
| 4446401 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.59 | 50.0 | 4.00e-01 | 95.7% | 57.9% |
| 3439758 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.59 | 41.0 | 3.69e-01 | 72.9% | 92.0% |
| 4033427 | 639.2.1.0 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) | 0.59 | 42.0 | 4.22e-01 | 84.3% | 74.3% |
| 4405860 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.59 | 47.0 | 4.63e-01 | 91.4% | 86.7% |
| 4273807 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.58 | 45.0 | 2.76e-01 | 84.3% | 63.4% |
| 3246361 | 101.1.17.18 ↗ | alpha arrays › HTH › HTH › FF domain › FF_PRPF40A | 0.58 | 33.0 | 3.41e-01 | 80.0% | 58.5% |
| 4066209 | 101.1.2.498 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25870 | 0.58 | 39.0 | 2.93e-01 | 71.4% | 34.6% |
| 5022878 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.58 | 41.0 | 3.11e-01 | 75.7% | 32.9% |
| 3541829 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 41.0 | 3.57e-01 | 81.4% | 48.2% |
| 3996790 | 103.4.1.6 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › EloA-BP1 | 0.57 | 47.0 | 4.67e-01 | 97.1% | 92.0% |
| 4015392 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 43.0 | 2.71e-01 | 87.1% | 14.3% |
| 4499455 | 633.5.1.1 ↗ | alpha bundles › Bromodomain-like › LemA-like › LemA-like › LemA | 0.56 | 48.0 | 3.72e-01 | 95.7% | 46.3% |
| 3690869 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 43.0 | 3.93e-01 | 82.9% | 100.0% |
| 3700870 | 108.1.1.27 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 | 0.55 | 43.0 | 3.81e-01 | 85.7% | 70.5% |
| 3215505 | 7015.1.1.1 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC | 0.55 | 45.0 | 3.44e-01 | 95.7% | 63.2% |
| 3898027 | 108.1.1.190 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_13 | 0.54 | 41.0 | 2.85e-01 | 97.1% | 21.8% |
| 5064035 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.54 | 42.0 | 4.44e-01 | 90.0% | 100.0% |
| 3652256 | 7088.1.1.2 ↗ | alpha arrays › GPI-anchored protein › GPI-anchored protein › GPI-anchored protein › LLG1 | 0.54 | 41.0 | 3.59e-01 | 84.3% | 81.6% |
| 4018990 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.54 | 44.0 | 2.84e-01 | 91.4% | 36.9% |
| 3281097 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.54 | 45.0 | 3.40e-01 | 92.9% | 72.0% |
| 3802087 | 108.1.1.99 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 | 0.54 | 46.0 | 3.40e-01 | 97.1% | 83.1% |
| 4947265 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.54 | 44.0 | 4.49e-01 | 94.3% | 95.7% |
| 5066642 | 4009.1.1.1 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom | 0.54 | 44.0 | 4.48e-01 | 94.3% | 95.7% |
| 3403758 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.53 | 40.0 | 2.96e-01 | 81.4% | 66.2% |
| 4545640 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 42.0 | 4.01e-01 | 91.4% | 72.9% |
| None | — | 0.53 | 35.0 | 2.92e-01 | 70.0% | 45.2% | |
| 5078120 | 4009.1.1.1 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom | 0.52 | 42.0 | 4.26e-01 | 92.9% | 97.1% |
| 4974459 | 4009.1.1.1 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom | 0.52 | 41.0 | 4.14e-01 | 91.4% | 98.6% |
| 3438142 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.52 | 44.0 | 3.71e-01 | 97.1% | 54.4% |
| 3549090 | 108.1.1.98 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 | 0.52 | 43.0 | 3.29e-01 | 97.1% | 37.3% |
| 5029449 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.52 | 43.0 | 3.22e-01 | 92.9% | 83.6% |
| 5009666 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.51 | 41.0 | 3.45e-01 | 94.3% | 86.7% |
| 3908024 | 108.1.1.96 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 | 0.51 | 42.0 | 3.98e-01 | 94.3% | 80.0% |
| 3921258 | 108.1.1.99 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 | 0.50 | 41.0 | 3.91e-01 | 98.6% | 83.3% |
| 3785424 | 5069.1.3.6 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › MCP1_TM | 0.50 | 44.0 | 3.06e-01 | 100.0% | 51.4% |
| 4991388 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.50 | 40.0 | 3.02e-01 | 88.6% | 92.8% |