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IMGVR_UViG_3300021471_000162-3300021471-Ga0190359_100030224

Arc-Vir

IMGVR_UViG_3300021471_000162-3300021471-Ga0190359_100030224

Quality

92.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-72
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.76 52.0 5.44e-01 71.0% 84.1%
2aehA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.67 43.0 3.91e-01 73.9% 47.9%
3lqmA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 41.0 3.65e-01 76.8% 43.1%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.63 56.0 5.11e-01 100.0% 84.8%
1x5fA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 42.0 3.50e-01 73.9% 40.0%
5e55B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 43.0 3.96e-01 100.0% 54.8%
1c4pC00 3.10.20.180 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 41.0 3.43e-01 75.4% 82.6%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 44.0 3.43e-01 82.6% 53.8%
4cvuA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 40.0 2.94e-01 72.5% 30.2%
2biiA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 40.0 3.00e-01 72.5% 42.5%
5noiA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 3.44e-01 71.0% 52.9%
8bxrA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 3.65e-01 73.9% 56.3%
4bwsF00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.56 36.0 3.68e-01 72.5% 67.2%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.56 38.0 3.67e-01 72.5% 79.3%
3zn4A00 2.60.120.1180 Mainly Beta › Sandwich › Jelly Rolls › 0.54 37.0 2.89e-01 71.0% 49.7%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 41.0 3.55e-01 84.1% 71.1%
1w99A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 36.0 2.72e-01 72.5% 35.6%
3g7dA03 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 36.0 3.02e-01 72.5% 40.3%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
199962 3115.5.1.1 a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.76 52.0 5.44e-01 71.0% 84.1%
3446646 11.1.1.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Expansin_C 0.64 41.0 4.12e-01 72.5% 63.0%
4974146 75.1.1.0 beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like 0.64 44.0 3.44e-01 72.5% 98.7%
3292704 11.1.1.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Expansin_C 0.63 40.0 3.59e-01 72.5% 45.0%
3837954 1.1.7.87 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.62 43.0 3.88e-01 72.5% 63.2%
3467170 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.61 47.0 4.94e-01 100.0% 93.7%
3829438 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.61 42.0 3.74e-01 72.5% 61.0%
4996027 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.61 44.0 3.06e-01 79.7% 80.8%
5014684 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.60 44.0 4.63e-01 79.7% 94.8%
3899607 11.1.1.117 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EpoR_lig-bind 0.59 40.0 3.50e-01 73.9% 45.7%
5052150 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 42.0 4.59e-01 76.8% 94.5%
4151900 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.58 43.0 3.39e-01 78.3% 59.0%
3479367 822.1.1.1 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.58 38.0 3.92e-01 71.0% 71.9%
4231372 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.57 39.0 3.98e-01 73.9% 98.6%
4147528 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.57 39.0 3.91e-01 72.5% 98.6%
3594757 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.56 38.0 3.52e-01 72.5% 97.9%
3570691 220.1.1.208 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28207 0.55 38.0 3.29e-01 72.5% 68.2%
4234915 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.55 41.0 3.56e-01 84.1% 64.3%
3252189 11.1.1.914 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29344 0.54 36.0 3.24e-01 73.9% 47.0%
3998576 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 41.0 3.10e-01 98.6% 32.6%
3440815 5.1.11.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_AT5G49610-like 0.53 37.0 2.41e-01 73.9% 97.1%
3959440 4.1.1.180 beta barrels › SH3 › SH3 › SH3 › DUF3107 0.53 38.0 3.87e-01 76.8% 100.0%
3727353 10.41.1.1 beta sandwiches › jelly-roll › Protein Hikeshi jelly-roll domain › Protein Hikeshi jelly-roll domain › Hikeshi-like_N 0.51 40.0 3.48e-01 89.9% 55.7%
3419963 11.2.1.37 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 0.51 35.0 2.98e-01 73.9% 96.0%
4909079 3019.1.1.9 beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › FliD_C, Flagellin_IN 0.51 34.0 2.98e-01 71.0% 60.5%
3604145 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 39.0 4.08e-01 97.1% 96.7%
D2 medium residues 78-117
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xjyA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.79 58.0 4.97e-01 80.0% 69.8%
1x62A01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.76 56.0 4.98e-01 82.5% 71.7%
4hi8B00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.75 57.0 4.66e-01 82.5% 100.0%
3lqyA00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.75 45.0 2.83e-01 100.0% 12.8%
2d8xA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.71 61.0 5.14e-01 100.0% 68.6%
2ds5A00 6.20.220.10 Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain 0.70 54.0 5.33e-01 87.5% 90.7%
4jcjB01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.68 54.0 4.67e-01 90.0% 70.8%
2cuqA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.67 55.0 4.48e-01 95.0% 60.0%
2dj7A00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.66 51.0 4.28e-01 95.0% 72.5%
2d8yA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.66 55.0 4.67e-01 100.0% 66.7%
2dloA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.65 49.0 4.16e-01 95.0% 71.6%
2aw4Z00 4.10.830.30 Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal protein L31 0.64 46.0 4.00e-01 82.5% 85.7%
2miuA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.62 48.0 3.74e-01 92.5% 55.1%
1wigA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.59 45.0 3.86e-01 90.0% 63.0%
1mbmD03 3.30.40.20 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Chymotrypsin-like serine protease; domain 3 0.57 39.0 3.81e-01 77.5% 87.5%
2fsjA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 42.0 2.94e-01 87.5% 34.8%
5fb0C01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 43.0 3.94e-01 100.0% 90.2%
2iybE00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.54 39.0 3.58e-01 90.0% 95.3%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 46.0 3.64e-01 100.0% 72.9%
3hdeC00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.52 44.0 2.99e-01 100.0% 37.2%
4hltA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 42.0 2.93e-01 100.0% 87.1%
1tdzA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 43.0 3.03e-01 100.0% 50.0%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4026572 377.1.3.1 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › Zinc-binding subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › zf-FPG_IleRS 0.91 73.0 7.74e-01 85.0% 97.1%
4994045 377.1.1.134 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF7573 0.90 69.0 7.37e-01 82.5% 100.0%
5015844 375.1.5.2 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein Ta0289-C › Zn_ribbon_RRN7 0.89 60.0 6.73e-01 72.5% 100.0%
4929975 375.1.5.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein Ta0289-C 0.87 60.0 6.60e-01 72.5% 96.7%
4934370 375.1.5.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein Ta0289-C 0.85 60.0 6.66e-01 75.0% 100.0%
3697191 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.82 60.0 6.35e-01 80.0% 97.1%
3928404 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.81 64.0 6.45e-01 87.5% 92.5%
3211674 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.80 54.0 5.95e-01 70.0% 100.0%
3274719 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.79 54.0 5.69e-01 72.5% 100.0%
3519190 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.79 58.0 5.64e-01 82.5% 80.0%
3897559 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.78 55.0 5.82e-01 75.0% 94.3%
3232023 377.1.1.1 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C4 0.77 61.0 4.73e-01 90.0% 86.7%
4410490 3961.1.1.0 0.77 62.0 4.62e-01 90.0% 37.0%
3252156 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.77 53.0 5.32e-01 72.5% 80.0%
4963186 375.1.1.342 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7573 0.76 56.0 5.94e-01 80.0% 100.0%
3233609 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.75 50.0 5.44e-01 70.0% 100.0%
4001675 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.75 61.0 5.49e-01 97.5% 70.0%
3233026 377.1.1.1 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C4 0.74 64.0 4.81e-01 100.0% 85.9%
3922373 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.74 49.0 5.27e-01 70.0% 100.0%
4224305 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.74 55.0 5.81e-01 82.5% 94.3%
5027852 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.73 51.0 5.31e-01 75.0% 100.0%
3230544 386.1.1.247 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › LIM 0.73 57.0 4.04e-01 87.5% 36.7%
4000690 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.73 53.0 4.98e-01 80.0% 96.0%
3927094 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.72 55.0 4.52e-01 82.5% 48.6%
3233597 377.1.1.1 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C4 0.71 57.0 4.68e-01 95.0% 96.2%
3628874 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.71 56.0 5.91e-01 87.5% 100.0%
5061512 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.69 57.0 5.75e-01 92.5% 97.5%
3976992 2002.1.1.300 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI, C-C_Bond_Lyase 0.69 46.0 2.77e-01 100.0% 9.5%
3435304 376.1.1.52 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › LIM 0.68 57.0 4.91e-01 97.5% 72.3%
3890344 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.68 45.0 4.83e-01 70.0% 96.7%
3164257 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.67 45.0 2.71e-01 100.0% 9.7%
3584387 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.67 45.0 4.88e-01 72.5% 96.7%
3395115 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.66 52.0 4.71e-01 95.0% 96.7%
5030292 931.1.1.0 few secondary structure elements › Metallothionein › Metallothionein › Metallothionein 0.66 46.0 4.80e-01 77.5% 97.1%
3524547 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.65 49.0 4.49e-01 92.5% 93.3%
3784963 377.13.1.2 few secondary structure elements › Glucocorticoid receptor-like › Primase zinc finger › Primase zinc finger › zf-primase 0.64 45.0 4.72e-01 75.0% 100.0%
3998966 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.63 44.0 4.56e-01 75.0% 100.0%
3301457 931.1.1.7 few secondary structure elements › Metallothionein › Metallothionein › Metallothionein › VATC 0.60 41.0 4.26e-01 77.5% 97.1%
3700937 377.9.1.2 few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT 0.57 41.0 4.16e-01 85.0% 92.5%
3573532 2007.15.1.11 a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › MAP3K_TRAF_bd 0.57 47.0 3.26e-01 92.5% 84.4%
3276479 621.1.1.3 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB 0.53 46.0 2.86e-01 100.0% 18.5%
4968047 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 46.0 3.34e-01 97.5% 51.4%
5028121 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.51 37.0 2.79e-01 92.5% 80.8%
3967891 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.50 44.0 3.45e-01 100.0% 84.7%