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IMGVR_UViG_3300021471_000162-3300021471-Ga0190359_100030233
Arc-VirIMGVR_UViG_3300021471_000162-3300021471-Ga0190359_100030233
Identity
- Kingdom:
- archaea
Quality
77.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-66
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c12A01 | 2.30.30.910 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 44.0 | 4.77e-01 | 72.6% | 74.5% |
| 2pp6A02 | 2.40.10.210 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) | 0.72 | 44.0 | 4.39e-01 | 71.0% | 60.3% |
| 1xg9A02 | 3.10.25.20 | Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › | 0.70 | 50.0 | 5.03e-01 | 75.8% | 79.0% |
| 2qggA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.68 | 46.0 | 4.02e-01 | 72.6% | 47.3% |
| 1mhmB00 | 3.30.360.50 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase | 0.67 | 44.0 | 4.69e-01 | 93.5% | 77.8% |
| 2cqoA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 46.0 | 4.06e-01 | 72.6% | 87.0% |
| 2zdiC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 54.0 | 4.07e-01 | 87.1% | 62.2% |
| 5tvoB00 | 3.30.360.50 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase | 0.67 | 45.0 | 4.66e-01 | 88.7% | 74.6% |
| 2f1lA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.66 | 45.0 | 4.00e-01 | 72.6% | 49.4% |
| 3b5mA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.64 | 43.0 | 3.53e-01 | 71.0% | 57.1% |
| 3ep6B01 | 3.30.360.50 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase | 0.64 | 41.0 | 4.80e-01 | 82.3% | 100.0% |
| 2qggA02 | 2.30.30.240 | Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain | 0.64 | 43.0 | 3.94e-01 | 71.0% | 56.6% |
| 1xqbA01 | 2.40.30.70 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like | 0.63 | 45.0 | 3.81e-01 | 77.4% | 57.8% |
| 6f2mA02 | 2.40.30.290 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.62 | 47.0 | 4.23e-01 | 82.3% | 66.7% |
| 2zzeA03 | 2.40.30.130 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.61 | 44.0 | 3.78e-01 | 75.8% | 75.5% |
| 7a0hA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.61 | 44.0 | 3.73e-01 | 83.9% | 46.5% |
| 2apoA03 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 44.0 | 3.89e-01 | 79.0% | 54.3% |
| 2zu2A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 40.0 | 3.51e-01 | 71.0% | 56.1% |
| 3rq1D01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.59 | 50.0 | 3.83e-01 | 98.4% | 58.2% |
| 3gs9A01 | 6.20.110.10 | Special › Other non-globular › Thrombin, subunit H › | 0.57 | 39.0 | 3.68e-01 | 74.2% | 78.5% |
| 2ausC02 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.56 | 39.0 | 2.86e-01 | 77.4% | 24.0% |
| 1a31A02 | 2.170.11.10 | Mainly Beta › Beta Complex › DNA Topoisomerase I; domain 2 › DNA Topoisomerase I, domain 2 | 0.56 | 44.0 | 3.74e-01 | 90.3% | 98.2% |
| 4ge6A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 41.0 | 2.56e-01 | 79.0% | 18.8% |
| 4m9fA00 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 36.0 | 2.61e-01 | 77.4% | 77.5% |
| 2b9kA00 | 2.20.20.70 | Mainly Beta › Single Sheet › Anthopleurin-A › | 0.51 | 31.0 | 3.38e-01 | 72.6% | 78.7% |
| 7vjvA01 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.50 | 37.0 | 2.62e-01 | 80.6% | 99.5% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3515407 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.80 | 64.0 | 4.66e-01 | 87.1% | 47.6% |
| 4521547 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.79 | 49.0 | 4.34e-01 | 74.2% | 44.4% |
| 4596341 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.71 | 45.0 | 3.93e-01 | 72.6% | 42.1% |
| 806 | 270.1.1.4 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C_2 | 0.70 | 50.0 | 5.04e-01 | 75.8% | 79.0% |
| 3409778 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.69 | 56.0 | 4.45e-01 | 91.9% | 56.2% |
| 3506274 | 331.2.1.7 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM1_C_vert_fung | 0.69 | 54.0 | 4.34e-01 | 87.1% | 48.0% |
| 3758651 | 633.23.1.34 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 | 0.67 | 60.0 | 4.20e-01 | 100.0% | 54.7% |
| 4140516 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.66 | 55.0 | 3.53e-01 | 98.4% | 20.4% |
| 4209058 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.65 | 45.0 | 3.87e-01 | 72.6% | 49.0% |
| 4194151 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.64 | 44.0 | 3.88e-01 | 71.0% | 48.9% |
| 5022325 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.64 | 51.0 | 4.33e-01 | 85.5% | 79.0% |
| 1694878 | 109.2.1.16 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › LANC_like | 0.64 | 46.0 | 2.87e-01 | 74.2% | 92.3% |
| 3923481 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.63 | 47.0 | 3.00e-01 | 79.0% | 53.5% |
| 3180816 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.63 | 47.0 | 3.34e-01 | 79.0% | 71.4% |
| 4471663 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.63 | 40.0 | 3.54e-01 | 72.6% | 42.1% |
| 3799069 | 206.1.1.72 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal | 0.61 | 47.0 | 3.01e-01 | 82.3% | 79.3% |
| 4872438 | 239.1.1.5 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C | 0.61 | 42.0 | 4.16e-01 | 71.0% | 78.1% |
| 4974179 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.61 | 46.0 | 3.86e-01 | 82.3% | 51.8% |
| 4322439 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.61 | 43.0 | 3.62e-01 | 75.8% | 67.3% |
| 4276265 | 6012.1.1.0 ↗ | few secondary structure elements › Antimicrobial peptide LCI › Antimicrobial peptide LCI › Antimicrobial peptide LCI | 0.61 | 37.0 | 4.27e-01 | 71.0% | 95.0% |
| 4600813 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.60 | 43.0 | 3.58e-01 | 75.8% | 70.9% |
| 3614309 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.59 | 53.0 | 3.34e-01 | 100.0% | 31.9% |
| 3352624 | 5.1.10.7 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › RCC1, RCC1_2 | 0.57 | 40.0 | 3.80e-01 | 74.2% | 86.7% |
| 3333815 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.57 | 45.0 | 2.91e-01 | 88.7% | 22.0% |
| 3975275 | 1.1.13.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Gifsy-2 | 0.56 | 44.0 | 3.88e-01 | 87.1% | 90.5% |
| 3603433 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.55 | 37.0 | 3.04e-01 | 71.0% | 86.7% |
| 3604542 | 601.7.2.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › HEPN domain in CRISPR-associated protein Csx1 › Csx1_HEPN | 0.54 | 41.0 | 3.09e-01 | 82.3% | 54.7% |
| 3234660 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.54 | 38.0 | 2.56e-01 | 75.8% | 20.4% |
| 3513530 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.51 | 42.0 | 3.45e-01 | 100.0% | 78.5% |
| 4030160 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 45.0 | 3.13e-01 | 100.0% | 44.7% |