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IMGVR_UViG_3300021472_000137-3300021472-Ga0190363_100036414

Arc-Vir

IMGVR_UViG_3300021472_000137-3300021472-Ga0190363_100036414

Identity

Kingdom:
archaea

Quality

72.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 18-100
PDB
Domain cluster: representative
D2 medium residues 101-158
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jtxA01 6.10.140.1250 Special › Helix non-globular › Helix Hairpins › 0.59 38.0 4.08e-01 79.3% 82.6%
2ys9A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 40.0 3.88e-01 89.7% 61.4%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.57 47.0 4.14e-01 98.3% 77.7%
1mw9X02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.56 45.0 3.33e-01 91.4% 47.9%
2wmfA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 42.0 2.67e-01 84.5% 33.6%
5dkaA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 37.0 3.19e-01 74.1% 43.8%
3hh8A01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.52 40.0 3.08e-01 87.9% 36.2%
1rzsA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 31.0 3.06e-01 93.1% 55.7%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.22e-01 75.9% 57.8%
3fsyA02 3.30.60.70 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Trimeric LpxA-like enzymes 0.50 31.0 3.44e-01 74.1% 87.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5006731 101.32.1.1 ↗ alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin › Fer2_BFD 0.63 52.0 4.75e-01 96.6% 73.8%
3271175 4019.1.1.6 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.61 45.0 3.76e-01 98.3% 44.8%
3224012 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 49.0 4.42e-01 96.6% 74.1%
3388396 101.1.1.485 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_22 0.59 43.0 4.12e-01 79.3% 86.8%
4875850 4967.1.1.14 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Flavi_NS5_thumb 0.54 40.0 3.75e-01 84.5% 89.7%
5051054 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.53 41.0 2.82e-01 89.7% 37.4%
5053635 2002.1.1.102 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP 0.53 43.0 2.87e-01 100.0% 75.8%
3290039 191.1.1.42 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_41 0.52 44.0 3.46e-01 100.0% 67.4%
4981520 7531.1.1.1 ↗ a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.50 42.0 2.86e-01 100.0% 45.7%
D3 medium residues 162-255
PDB