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IMGVR_UViG_3300021483_000005-3300021483-Ga0190331_100001821

Arc-Vir

IMGVR_UViG_3300021483_000005-3300021483-Ga0190331_100001821

Quality

73.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-63
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 45.0 3.40e-01 100.0% 27.0%
4u6bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.73 46.0 2.87e-01 100.0% 11.7%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.72 53.0 4.13e-01 79.0% 95.6%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 44.0 3.37e-01 100.0% 27.1%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 48.0 3.38e-01 100.0% 24.0%
3nvoA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.70 41.0 3.17e-01 98.4% 26.7%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.69 57.0 4.50e-01 90.3% 60.9%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.68 59.0 4.63e-01 100.0% 96.3%
2qq6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.67 57.0 4.73e-01 100.0% 77.6%
2plgA01 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.67 48.0 3.80e-01 77.4% 65.2%
1h8mA00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.66 55.0 4.23e-01 93.5% 57.1%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.65 44.0 3.18e-01 100.0% 26.5%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.65 51.0 4.20e-01 88.7% 62.0%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 46.0 3.61e-01 93.5% 35.9%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 46.0 4.12e-01 77.4% 79.8%
7k7jA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 43.0 3.61e-01 72.6% 95.4%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 51.0 4.26e-01 88.7% 68.6%
3zm6A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.62 50.0 3.48e-01 91.9% 27.8%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 45.0 4.29e-01 83.9% 67.6%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.61 42.0 4.05e-01 75.8% 62.2%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 51.0 4.40e-01 98.4% 100.0%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 43.0 3.66e-01 77.4% 74.1%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.60 37.0 3.37e-01 100.0% 44.3%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 50.0 4.22e-01 100.0% 95.7%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 45.0 4.22e-01 82.3% 69.2%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.59 45.0 3.44e-01 100.0% 36.8%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.59 41.0 3.44e-01 75.8% 42.9%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.58 39.0 4.04e-01 100.0% 73.3%
2hfqA00 3.10.510.10 Alpha Beta › Roll › NE1680-like fold › NE1680-like 0.56 45.0 4.06e-01 87.1% 94.1%
4g41A00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.56 41.0 2.81e-01 77.4% 66.9%
4qt4A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.56 39.0 2.82e-01 74.2% 42.3%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 48.0 3.00e-01 93.5% 35.7%
1lwjA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 42.0 4.57e-01 98.4% 100.0%
3jr1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 49.0 4.14e-01 100.0% 73.7%
5ncsA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 48.0 3.67e-01 100.0% 89.9%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.53 48.0 3.62e-01 100.0% 61.6%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.53 39.0 3.21e-01 100.0% 43.6%
4yrdA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 39.0 3.19e-01 80.6% 92.4%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.52 45.0 3.47e-01 100.0% 57.0%
4aeeA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 47.0 4.65e-01 98.4% 91.0%
3dxpA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 46.0 4.03e-01 100.0% 75.3%
2bkkA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 47.0 4.09e-01 100.0% 83.3%
6sulA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 44.0 3.74e-01 100.0% 79.6%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.51 37.0 3.56e-01 83.9% 97.5%
2bhzA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 46.0 4.42e-01 100.0% 100.0%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3637642 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.82 60.0 4.89e-01 77.4% 73.6%
3164102 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.81 57.0 6.45e-01 74.2% 100.0%
3784810 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.81 56.0 4.84e-01 72.6% 91.6%
3315491 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.79 59.0 4.47e-01 79.0% 37.9%
2998372 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.78 47.0 5.11e-01 100.0% 71.7%
5082957 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.77 49.0 3.09e-01 100.0% 14.0%
3295272 387.1.3.0 few secondary structure elements › omega toxin-like › omega toxin-related › Colipase-like 0.75 47.0 5.38e-01 98.4% 88.9%
3739528 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.74 48.0 3.26e-01 100.0% 20.0%
1171961 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.73 45.0 4.51e-01 100.0% 60.3%
5013176 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.73 51.0 4.85e-01 74.2% 68.0%
5014685 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.73 45.0 4.50e-01 100.0% 60.0%
4249934 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.72 49.0 3.94e-01 71.0% 45.8%
1171964 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.72 44.0 4.53e-01 100.0% 65.5%
1400361 5.1.3.34 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF5128 0.71 44.0 2.68e-01 100.0% 10.7%
5039195 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.70 44.0 3.00e-01 100.0% 18.1%
3903931 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.70 44.0 2.73e-01 100.0% 12.2%
5075279 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 57.0 4.63e-01 90.3% 67.8%
3303363 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 57.0 3.90e-01 90.3% 37.1%
5044629 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 57.0 4.63e-01 91.9% 64.3%
4945318 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 54.0 4.43e-01 87.1% 57.4%
3848227 223.2.1.15 a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.68 57.0 4.26e-01 91.9% 53.3%
5023931 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 54.0 5.20e-01 91.9% 75.7%
3709800 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 46.0 3.97e-01 85.5% 46.3%
4945712 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 58.0 4.56e-01 95.2% 59.2%
5074649 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 56.0 4.42e-01 91.9% 61.6%
3386524 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.67 59.0 4.34e-01 98.4% 52.5%
4439836 7053.1.1.1 a+b complex topology › oligomerization domain of PprA › oligomerization domain of PprA › oligomerization domain of PprA › PF29826 0.67 51.0 3.63e-01 82.3% 62.8%
4935362 205.1.1.22 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_21 0.67 61.0 3.74e-01 100.0% 26.5%
4977806 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 55.0 4.31e-01 91.9% 63.1%
5074437 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 49.0 4.13e-01 80.6% 47.6%
3457086 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.65 49.0 3.24e-01 82.3% 29.5%
3587125 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.65 39.0 2.84e-01 77.4% 23.7%
4949514 205.1.1.16 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.64 57.0 3.48e-01 98.4% 25.3%
5074976 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 53.0 4.09e-01 91.9% 54.3%
3540167 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 55.0 4.36e-01 100.0% 54.8%
3490231 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.63 50.0 3.09e-01 100.0% 15.1%
3736764 3711.1.1.0 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.62 52.0 3.80e-01 95.2% 43.9%
5071762 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 51.0 4.10e-01 91.9% 60.0%
3283603 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 48.0 4.26e-01 82.3% 85.9%
3991383 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.61 52.0 4.61e-01 95.2% 73.3%
5074455 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 53.0 4.35e-01 100.0% 54.5%
4933539 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.59 53.0 3.58e-01 98.4% 96.3%
3924881 206.1.1.63 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PIP49_C+PIP49_N 0.59 55.0 3.39e-01 100.0% 40.6%
3962450 9.27.1.0 beta barrels › Lipocalins/Streptavidin › LpqH › LpqH 0.59 48.0 4.01e-01 88.7% 88.6%
3624994 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 47.0 3.04e-01 93.5% 52.4%
3940325 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 46.0 3.04e-01 90.3% 28.2%
5077254 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.57 48.0 2.84e-01 93.5% 53.2%
4988758 205.1.1.16 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.57 49.0 4.22e-01 100.0% 88.6%
3603731 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 52.0 3.95e-01 100.0% 71.4%
5032985 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.57 45.0 3.07e-01 88.7% 52.1%
5469 4943.1.1.2 a+b two layers › YcgL/NE1680-like › YcgL/NE1680-like › YcgL/NE1680-like › DUF2024 0.56 45.0 4.06e-01 87.1% 94.1%
None 0.56 44.0 2.85e-01 90.3% 56.8%
3648115 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.55 45.0 3.71e-01 100.0% 91.9%
1309460 3338.1.1.1 a+b two layers › Fragilysin-3 prodomain-like › Fragilysin-3 prodomain › Fragilysin-3 prodomain › fragilysinNterm 0.55 39.0 3.12e-01 77.4% 86.7%
1980 12.1.1.11 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › MGTA_C 0.54 41.0 4.51e-01 98.4% 100.0%
3498107 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 44.0 2.88e-01 91.9% 54.3%
3258903 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.54 44.0 3.00e-01 93.5% 43.5%
4029635 241.6.1.0 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.53 49.0 3.70e-01 100.0% 59.4%
4969870 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.52 46.0 2.82e-01 96.8% 27.3%
3987244 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.52 47.0 3.02e-01 100.0% 24.6%
4277447 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.52 40.0 2.89e-01 87.1% 70.7%
4961460 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.52 42.0 2.63e-01 91.9% 16.8%
4136484 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.52 42.0 2.80e-01 93.5% 62.8%
3289567 881.1.1.15 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 0.51 47.0 3.60e-01 100.0% 70.4%
5022933 3604.1.1.0 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.51 41.0 4.32e-01 100.0% 96.4%