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IMGVR_UViG_3300021488_000008-3300021488-Ga0190305_10001753
Arc-VirIMGVR_UViG_3300021488_000008-3300021488-Ga0190305_10001753
Identity
- Kingdom:
- archaea
Quality
93.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-73
Domain cluster:
rep: SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00276__D4-85
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ov3B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.77 | 48.0 | 3.07e-01 | 73.6% | 14.9% |
| 3g4eA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.75 | 46.0 | 2.99e-01 | 70.8% | 15.2% |
| 5gtqA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.70 | 44.0 | 2.87e-01 | 72.2% | 15.0% |
| 1tfkA00 | 3.10.450.200 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 60.0 | 5.52e-01 | 98.6% | 81.9% |
| 1l0qA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.66 | 46.0 | 2.99e-01 | 72.2% | 20.3% |
| 2kxpA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.63 | 40.0 | 3.51e-01 | 100.0% | 43.0% |
| 3dsmA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.63 | 44.0 | 2.82e-01 | 73.6% | 19.9% |
| 5bv3D01 | 3.30.200.40 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Scavenger mRNA decapping enzyme, N-terminal domain | 0.62 | 44.0 | 3.87e-01 | 76.4% | 90.2% |
| 3hqxA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 42.0 | 3.74e-01 | 70.8% | 100.0% |
| 1x05A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 43.0 | 3.53e-01 | 73.6% | 44.2% |
| 3d4eA01 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.58 | 47.0 | 4.51e-01 | 100.0% | 76.2% |
| 2bjiA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.58 | 41.0 | 3.33e-01 | 76.4% | 89.6% |
| 3b8bA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.57 | 39.0 | 3.09e-01 | 70.8% | 78.6% |
| 5chtB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.57 | 41.0 | 2.72e-01 | 76.4% | 91.0% |
| 3tc9A02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.57 | 47.0 | 3.06e-01 | 100.0% | 20.4% |
| 2q74A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.56 | 40.0 | 3.36e-01 | 76.4% | 85.3% |
| 3fcyA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 37.0 | 2.49e-01 | 70.8% | 29.7% |
| 3wx1A00 | 2.170.150.20 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. | 0.53 | 42.0 | 3.71e-01 | 87.5% | 93.5% |
| 4mtsA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 41.0 | 3.45e-01 | 86.1% | 97.7% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081030 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.80 | 71.0 | 7.08e-01 | 98.6% | 93.3% |
| 3709124 | 5.1.5.68 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › RAB3GAP2_N | 0.75 | 49.0 | 2.90e-01 | 100.0% | 9.7% |
| 4968138 | 4312.1.1.15 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 | 0.73 | 67.0 | 6.18e-01 | 100.0% | 80.0% |
| 3300916 | 5.1.4.231 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FBA_3 | 0.71 | 48.0 | 3.09e-01 | 75.0% | 16.7% |
| 3382445 | 5.1.2.59 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Beta-prop_NOL10_N | 0.70 | 45.0 | 3.77e-01 | 73.6% | 39.2% |
| 5041343 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.67 | 45.0 | 4.53e-01 | 70.8% | 76.0% |
| 3729173 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.66 | 46.0 | 3.07e-01 | 73.6% | 18.3% |
| 4886106 | 4030.1.1.2 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › F-actin_cap_A | 0.66 | 41.0 | 4.75e-01 | 100.0% | 92.0% |
| 3254316 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.64 | 38.0 | 3.58e-01 | 87.5% | 47.8% |
| 4946506 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.64 | 45.0 | 4.47e-01 | 73.6% | 78.7% |
| 5055744 | 5.1.3.40 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylsulfotran_2 | 0.63 | 44.0 | 2.83e-01 | 73.6% | 23.9% |
| None | — | 0.60 | 43.0 | 2.83e-01 | 75.0% | 19.7% | |
| 2475231 | 519.1.1.1 ↗ | a+b two layers › mRNA decapping enzyme DcpS N-terminal domain › mRNA decapping enzyme DcpS N-terminal domain › mRNA decapping enzyme DcpS N-terminal domain › DcpS | 0.59 | 42.0 | 3.64e-01 | 76.4% | 90.7% |
| 3924548 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 50.0 | 4.39e-01 | 94.4% | 76.2% |
| 3509731 | 71.1.1.19 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF25898 | 0.57 | 49.0 | 3.59e-01 | 100.0% | 77.3% |
| 4942517 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.57 | 40.0 | 3.27e-01 | 75.0% | 90.3% |
| 3705234 | 5.1.4.73 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RAB3GAP2_N | 0.56 | 48.0 | 2.87e-01 | 94.4% | 92.9% |
| 3862288 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.55 | 46.0 | 3.00e-01 | 100.0% | 86.9% |
| 4029311 | 5.1.4.73 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RAB3GAP2_N | 0.55 | 50.0 | 3.15e-01 | 100.0% | 22.6% |
| 5075421 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.55 | 49.0 | 3.39e-01 | 100.0% | 85.0% |
| 3938022 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 47.0 | 2.96e-01 | 94.4% | 76.1% |
| 3589250 | 234.3.1.3 ↗ | a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain › PBECR4 | 0.54 | 47.0 | 3.61e-01 | 100.0% | 58.9% |
| 4032029 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.53 | 47.0 | 4.28e-01 | 100.0% | 75.8% |
| 5065686 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.52 | 46.0 | 3.48e-01 | 100.0% | 84.4% |
| 3783152 | 223.1.1.21 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like | 0.51 | 40.0 | 2.64e-01 | 84.7% | 27.5% |
| 3509895 | 206.1.1.15 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Fructosamin_kin | 0.51 | 35.0 | 2.37e-01 | 73.6% | 26.7% |