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IMGVR_UViG_3300021488_000009-3300021488-Ga0190305_100017626

Arc-Vir

IMGVR_UViG_3300021488_000009-3300021488-Ga0190305_100017626

Identity

Kingdom:
archaea

Quality

77.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-77
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qu8A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 46.0 3.25e-01 70.8% 51.5%
7ob9B01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.64 52.0 3.87e-01 95.4% 78.6%
4mchA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.60 46.0 3.09e-01 81.5% 58.8%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 43.0 3.54e-01 87.7% 40.6%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.59 41.0 3.73e-01 73.8% 77.3%
2yk0A03 1.20.58.1930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 44.0 2.98e-01 100.0% 23.3%
1olrA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.58 43.0 3.05e-01 83.1% 25.1%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.56 42.0 4.35e-01 83.1% 85.2%
6k5gA01 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.56 48.0 3.22e-01 95.4% 48.3%
3qpbF00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.56 45.0 3.01e-01 87.7% 63.7%
3gdoA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 40.0 2.79e-01 76.9% 68.3%
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 38.0 2.58e-01 73.8% 23.9%
2zwaA02 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.54 45.0 2.93e-01 95.4% 38.1%
1je0C00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.54 40.0 2.74e-01 78.5% 61.2%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.54 44.0 3.97e-01 90.8% 81.1%
1mk1A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 42.0 3.24e-01 96.9% 93.0%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.53 35.0 3.81e-01 75.4% 83.3%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.53 45.0 3.57e-01 95.4% 51.5%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.52 46.0 3.61e-01 100.0% 60.4%
1iktA00 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.52 40.0 3.32e-01 83.1% 73.0%
3sluA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.32e-01 96.9% 43.1%
5yjlC02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.52 41.0 3.38e-01 84.6% 85.6%
1n7oA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.52 36.0 3.37e-01 75.4% 68.2%
1sz2A02 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.52 47.0 3.28e-01 100.0% 44.0%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.51 38.0 3.18e-01 86.2% 59.9%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 40.0 3.42e-01 90.8% 100.0%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.51 45.0 3.71e-01 98.5% 89.1%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 43.0 3.88e-01 96.9% 96.7%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 38.0 3.11e-01 81.5% 80.8%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.50 32.0 3.43e-01 72.3% 76.8%
1auiA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.50 40.0 2.52e-01 87.7% 49.2%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3365621 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 52.0 4.02e-01 84.6% 38.1%
5047477 244.1.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO 0.67 48.0 3.63e-01 75.4% 89.0%
4019192 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.65 47.0 3.50e-01 76.9% 63.6%
3929729 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.64 56.0 4.02e-01 100.0% 59.0%
4989110 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.64 39.0 3.60e-01 93.8% 50.0%
3992152 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.63 55.0 4.25e-01 100.0% 92.7%
3925754 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.62 56.0 4.39e-01 100.0% 48.9%
3242374 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.61 53.0 4.47e-01 95.4% 96.3%
3435896 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.61 45.0 2.81e-01 100.0% 15.9%
3250807 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.61 54.0 3.82e-01 100.0% 38.5%
3185844 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 41.0 4.05e-01 98.5% 65.7%
4937122 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.60 35.0 3.42e-01 84.6% 50.7%
3201539 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 44.0 3.14e-01 80.0% 31.0%
5022840 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.57 41.0 3.73e-01 75.4% 71.8%
3907175 719.1.1.3 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PAXX 0.56 39.0 3.43e-01 73.8% 94.0%
3440815 5.1.11.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_AT5G49610-like 0.56 49.0 3.04e-01 95.4% 31.5%
3172856 5.1.4.575 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30290 0.56 46.0 2.97e-01 89.2% 23.6%
4931231 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 42.0 3.02e-01 83.1% 76.5%
3260733 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.55 44.0 3.72e-01 89.2% 98.2%
3254597 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 46.0 2.91e-01 93.8% 18.2%
5074905 268.1.1.0 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.54 41.0 3.47e-01 81.5% 70.0%
4173211 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.54 45.0 2.88e-01 93.8% 39.4%
3999983 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 41.0 3.74e-01 81.5% 84.7%
3790774 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 46.0 3.78e-01 95.4% 85.0%
3643520 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.54 44.0 2.89e-01 93.8% 31.1%
3460976 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.53 45.0 2.85e-01 93.8% 31.0%
5006353 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.53 31.0 2.67e-01 78.5% 35.2%
3436491 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.52 39.0 3.02e-01 83.1% 80.0%
1836450 5.1.4.42 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_4 0.52 46.0 2.93e-01 100.0% 38.4%
4234515 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.52 39.0 3.22e-01 81.5% 82.5%
4967044 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 41.0 2.84e-01 90.8% 57.3%
3624239 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 39.0 3.56e-01 83.1% 68.9%
5040467 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.51 41.0 2.98e-01 100.0% 73.1%
3254787 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 3.44e-01 96.9% 70.4%