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IMGVR_UViG_3300021488_000016-3300021488-Ga0190305_10003942

Arc-Vir

IMGVR_UViG_3300021488_000016-3300021488-Ga0190305_10003942

Quality

81.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-155
PDB
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.81 64.0 6.96e-01 99.3% 97.7%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.80 65.0 7.07e-01 98.7% 99.2%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.76 46.0 5.62e-01 100.0% 93.9%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.75 63.0 6.65e-01 99.3% 98.5%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.74 34.0 3.54e-01 96.1% 45.3%
4acvA00 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.74 56.0 6.20e-01 99.3% 99.2%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.71 26.0 3.73e-01 94.1% 70.4%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 37.0 4.36e-01 83.6% 74.0%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.69 65.0 5.76e-01 100.0% 80.5%
3io1A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 39.0 4.37e-01 90.1% 75.9%
2bj0A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.61 44.0 3.99e-01 89.5% 54.7%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 37.0 4.28e-01 92.1% 84.9%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 32.0 3.94e-01 82.2% 82.2%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.60 34.0 4.12e-01 82.2% 87.2%
4afhE00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.60 44.0 3.98e-01 89.5% 55.2%
4z9eA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.60 33.0 4.34e-01 94.1% 97.6%
1qf6A02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.59 39.0 4.51e-01 97.4% 95.3%
6dw1A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.58 43.0 3.86e-01 89.5% 54.3%
3u6yA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.58 34.0 4.17e-01 92.1% 88.9%
6d6tA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.58 42.0 3.83e-01 88.8% 54.3%
3jafA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.58 43.0 3.84e-01 88.8% 54.5%
2bg9C01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.57 42.0 3.82e-01 88.8% 55.0%
1aq3A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.57 36.0 3.90e-01 97.4% 73.6%
3byqA00 3.30.1330.110 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › BB2672 0.57 44.0 4.12e-01 82.2% 88.5%
3pgbA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.55 43.0 3.03e-01 82.9% 69.7%
1fx3B00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.54 38.0 3.89e-01 73.0% 95.3%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.53 34.0 3.63e-01 99.3% 73.3%
3nrfA00 2.60.40.4110 Mainly Beta › Sandwich › Immunoglobulin-like › Protein of unknown function DUF4354 0.53 31.0 3.70e-01 81.6% 86.3%
2wyhA05 2.60.40.2210 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 35.0 3.67e-01 92.8% 75.4%
3eniC00 2.50.10.10 Mainly Beta › Clam › Bacteriochlorophyll-a Protein › Bacteriochlorophyll A 0.52 44.0 3.42e-01 94.1% 66.9%
2c5dC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 4.12e-01 81.6% 100.0%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 28.0 3.26e-01 100.0% 74.3%
2nraC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 33.0 3.93e-01 92.1% 100.0%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 33.0 3.54e-01 100.0% 77.1%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589403 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.80 59.0 6.58e-01 96.7% 95.0%
4291659 304.124.1.8 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_Mu_Gp37 0.77 66.0 6.88e-01 98.7% 97.1%
5454 304.124.1.2 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Gp37 0.76 63.0 6.68e-01 100.0% 99.3%
5083880 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.74 66.0 6.77e-01 100.0% 100.0%
3921212 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.72 34.0 4.14e-01 82.2% 68.0%
3917010 243.3.1.20 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › AKAP28 0.70 36.0 3.92e-01 100.0% 59.2%
3964535 310.3.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilO 0.70 46.0 5.16e-01 100.0% 87.0%
5029814 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.69 31.0 4.67e-01 96.7% 100.0%
3249602 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 36.0 4.69e-01 80.9% 87.1%
3274587 11.1.5.62 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM49 0.66 37.0 4.57e-01 81.6% 85.0%
3655062 11.1.5.62 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM49 0.65 38.0 4.61e-01 80.9% 87.0%
3248195 11.1.1.900 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM49 0.65 38.0 4.67e-01 85.5% 88.1%
3424237 11.1.1.900 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM49 0.65 37.0 4.54e-01 80.9% 86.9%
5022778 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 37.0 4.17e-01 86.2% 73.0%
3466525 11.1.5.62 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM49 0.64 37.0 4.56e-01 80.9% 88.0%
3254535 11.1.5.62 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM49 0.63 37.0 4.56e-01 94.7% 90.8%
4940026 4081.1.1.17 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › DUF7345 0.62 44.0 4.20e-01 83.6% 62.3%
4941514 11.1.5.59 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 0.62 39.0 4.82e-01 81.6% 100.0%
3275780 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 42.0 4.67e-01 94.1% 88.2%
5044328 304.109.1.0 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e 0.60 47.0 4.10e-01 91.4% 54.3%
3749143 243.3.1.20 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › AKAP28 0.60 32.0 3.53e-01 100.0% 61.6%
3258612 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.59 42.0 4.54e-01 100.0% 85.4%
4979177 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.59 35.0 4.19e-01 95.4% 88.0%
3273509 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 39.0 4.26e-01 90.1% 82.1%
5065326 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.59 34.0 4.19e-01 94.1% 90.5%
4934212 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.58 34.0 4.18e-01 95.4% 90.5%
5026790 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.58 34.0 4.11e-01 95.4% 86.0%
4948199 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.58 35.0 4.26e-01 96.1% 93.7%
3797546 11.12.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like 0.58 42.0 3.82e-01 89.5% 54.0%
5061342 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.58 35.0 4.17e-01 95.4% 87.6%
4945893 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.58 34.0 4.31e-01 96.1% 97.8%
3259663 11.1.5.62 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM49 0.57 41.0 4.46e-01 92.8% 90.2%
4991896 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.57 33.0 4.19e-01 94.7% 97.7%
3267620 11.1.5.62 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM49 0.57 37.0 4.26e-01 81.6% 87.7%
3384696 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.56 53.0 5.03e-01 98.7% 90.2%
5020942 7503.1.1.0 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.56 40.0 3.89e-01 100.0% 65.3%
3198674 246.1.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase 0.56 39.0 3.48e-01 71.1% 83.3%
3644486 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.55 51.0 4.87e-01 98.7% 89.7%
5025924 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 37.0 4.07e-01 100.0% 85.0%
3642420 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.54 49.0 4.95e-01 95.4% 100.0%
5013821 872.1.1.0 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like 0.54 40.0 4.39e-01 75.7% 98.3%
3731118 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 41.0 3.55e-01 78.3% 71.2%
3438216 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.54 34.0 3.76e-01 77.6% 79.2%
3222007 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 39.0 2.58e-01 76.3% 26.5%
5027995 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.53 40.0 3.47e-01 78.3% 88.0%
3715576 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 3.82e-01 93.4% 77.1%
3589849 12.1.1.43 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_38 0.52 36.0 3.90e-01 99.3% 82.3%
3327314 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 46.0 3.17e-01 96.1% 30.2%
4540264 504.1.1.1 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB 0.52 36.0 3.67e-01 71.1% 97.3%
3583880 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.52 46.0 4.07e-01 98.0% 75.1%
3994520 11.12.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb 0.51 46.0 3.78e-01 98.7% 64.3%
3221989 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.51 47.0 4.19e-01 100.0% 82.9%
3491158 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.51 44.0 4.11e-01 94.7% 83.6%
3998755 11.12.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb 0.51 42.0 3.34e-01 88.8% 43.2%
3619547 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.51 46.0 4.07e-01 99.3% 79.5%
3926935 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.51 45.0 4.02e-01 96.7% 80.9%
3996101 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.50 45.0 4.19e-01 98.0% 82.1%
3245167 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.50 45.0 3.98e-01 98.0% 84.1%