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IMGVR_UViG_3300021488_000048-3300021488-Ga0190305_10014467
Arc-VirIMGVR_UViG_3300021488_000048-3300021488-Ga0190305_10014467
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-88
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rdgA02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 46.0 | 4.97e-01 | 90.9% | 98.6% |
| 3go5A01 | 2.40.50.330 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 39.0 | 4.30e-01 | 87.5% | 83.1% |
| 2ba0A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 45.0 | 4.60e-01 | 88.6% | 86.2% |
| 1v1pB02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 43.0 | 4.61e-01 | 90.9% | 100.0% |
| 4b8vA03 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.55 | 32.0 | 3.85e-01 | 80.7% | 100.0% |
| 2auwB02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 37.0 | 3.99e-01 | 78.4% | 88.6% |
| 3rd4B00 | 2.40.50.660 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 42.0 | 4.40e-01 | 90.9% | 96.3% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3283647 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.83 | 69.0 | 6.04e-01 | 88.6% | 94.4% |
| 3357873 | 2.1.1.315 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3, CDC24_OB2, CDC24_OB1 | 0.67 | 60.0 | 3.70e-01 | 100.0% | 99.2% |
| 5054825 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 50.0 | 4.66e-01 | 92.0% | 93.0% |
| 3363452 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 52.0 | 4.30e-01 | 96.6% | 87.7% |
| 3479031 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 50.0 | 4.51e-01 | 98.9% | 100.0% |
| 4193853 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.57 | 40.0 | 4.48e-01 | 88.6% | 100.0% |
| 3228854 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 47.0 | 4.10e-01 | 95.5% | 77.2% |
| 4178103 | 309.1.2.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain | 0.56 | 36.0 | 3.04e-01 | 100.0% | 35.6% |
| 4983065 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 42.0 | 3.94e-01 | 94.3% | 67.9% |
D2
high
residues 95-179
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cxjA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.67 | 57.0 | 4.88e-01 | 97.6% | 94.4% |
| 5zc1D00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 47.0 | 4.52e-01 | 76.5% | 92.9% |
| 4qwoB00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.62 | 49.0 | 4.26e-01 | 88.2% | 56.1% |
| 8gq6A01 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.61 | 45.0 | 3.14e-01 | 78.8% | 42.1% |
| 4uuwA03 | 3.90.950.20 | Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like | 0.61 | 48.0 | 4.06e-01 | 87.1% | 85.7% |
| 1x31D00 | 3.30.2270.10 | Alpha Beta › 2-Layer Sandwich › Folate-binding fold › Folate-binding superfamily | 0.60 | 41.0 | 4.09e-01 | 71.8% | 84.6% |
| 6u1oA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.59 | 47.0 | 4.39e-01 | 88.2% | 95.4% |
| 1j3mA00 | 3.30.310.70 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TT1751-like domain | 0.58 | 43.0 | 3.78e-01 | 78.8% | 86.6% |
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.57 | 45.0 | 3.67e-01 | 87.1% | 54.7% |
| 2lezA00 | 3.30.2450.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 | 0.57 | 38.0 | 3.42e-01 | 77.6% | 48.3% |
| 4ebgA00 | 3.10.450.560 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 40.0 | 3.87e-01 | 74.1% | 89.7% |
| 2mj7A00 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.56 | 41.0 | 3.55e-01 | 78.8% | 54.6% |
| 2xp1A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 48.0 | 4.72e-01 | 97.6% | 94.7% |
| 6mzoA01 | 3.40.50.11970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 47.0 | 4.13e-01 | 94.1% | 67.5% |
| 6pxcA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 45.0 | 4.29e-01 | 91.8% | 85.6% |
| 3q9oA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 44.0 | 3.34e-01 | 88.2% | 59.3% |
| 2k4vA00 | 3.30.160.370 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 | 0.54 | 42.0 | 3.69e-01 | 82.4% | 62.4% |
| 7wa9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 39.0 | 3.37e-01 | 77.6% | 83.0% |
| 2fiaB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 45.0 | 3.72e-01 | 100.0% | 89.9% |
| 6t5kC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.51 | 38.0 | 2.81e-01 | 77.6% | 53.1% |
| 2ywqA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.51 | 43.0 | 4.29e-01 | 100.0% | 93.2% |
| 2joiA00 | 3.30.310.190 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.50 | 38.0 | 3.71e-01 | 82.4% | 76.0% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3695979 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.68 | 47.0 | 4.26e-01 | 72.9% | 73.5% |
| 3212095 | 4205.1.1.7 ↗ | a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › HPF1 | 0.65 | 56.0 | 4.58e-01 | 94.1% | 77.4% |
| 3604446 | 2004.1.1.480 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 | 0.63 | 51.0 | 3.03e-01 | 87.1% | 20.0% |
| 3228525 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.62 | 51.0 | 4.79e-01 | 92.9% | 100.0% |
| 2803292 | 5.1.3.25 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid | 0.61 | 52.0 | 3.56e-01 | 95.3% | 74.5% |
| 4027687 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.60 | 38.0 | 4.43e-01 | 71.8% | 100.0% |
| 3264554 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.60 | 42.0 | 2.80e-01 | 72.9% | 49.6% |
| 3280079 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.59 | 44.0 | 3.86e-01 | 78.8% | 82.3% |
| 4970858 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.59 | 44.0 | 4.01e-01 | 78.8% | 67.3% |
| 3934141 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 43.0 | 3.33e-01 | 77.6% | 42.6% |
| 2583626 | 331.3.1.14 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3568 | 0.58 | 43.0 | 3.92e-01 | 78.8% | 72.4% |
| 3980088 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.58 | 43.0 | 3.98e-01 | 77.6% | 72.2% |
| 3478069 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.58 | 43.0 | 4.17e-01 | 78.8% | 73.7% |
| 3725186 | 883.1.1.7 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › MMM1 | 0.58 | 41.0 | 3.09e-01 | 74.1% | 96.2% |
| 4606694 | 4099.1.1.26 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Kre28 | 0.57 | 41.0 | 4.16e-01 | 77.6% | 98.8% |
| 185709 | 3389.1.1.1 ↗ | a+b two layers › hypothetical protein SAV0303 › hypothetical protein SAV0303 › hypothetical protein SAV0303 › DUF4467 | 0.56 | 40.0 | 3.92e-01 | 75.3% | 86.5% |
| 3253856 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.55 | 46.0 | 4.13e-01 | 96.5% | 92.0% |
| 6353 | 331.11.1.1 ↗ | a+b two layers › TBP-like › Rbstp2229 protein › Rbstp2229 protein › DUF1885 | 0.55 | 36.0 | 3.17e-01 | 70.6% | 46.0% |
| 4942828 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.54 | 38.0 | 3.16e-01 | 74.1% | 71.3% |
| 1094864 | 232.1.1.2 ↗ | a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › ADI | 0.54 | 40.0 | 2.64e-01 | 80.0% | 26.0% |
| 3404297 | 4.1.1.326 ↗ | beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 | 0.54 | 32.0 | 3.70e-01 | 88.2% | 89.1% |
| 5030605 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.54 | 48.0 | 4.06e-01 | 98.8% | 63.6% |
| 3742980 | 4099.1.1.4 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O | 0.53 | 42.0 | 3.83e-01 | 87.1% | 83.2% |
| 5004750 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.53 | 40.0 | 2.74e-01 | 83.5% | 52.0% |
| 3647116 | 220.1.1.78 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 | 0.53 | 41.0 | 3.71e-01 | 87.1% | 77.6% |
| 5030710 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.52 | 44.0 | 3.78e-01 | 100.0% | 88.7% |
| 4538466 | 3197.1.1.1 ↗ | a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N | 0.51 | 36.0 | 3.24e-01 | 76.5% | 60.8% |
| 4996269 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.50 | 40.0 | 3.06e-01 | 90.6% | 59.1% |
D3
high
residues 182-266
Domain cluster:
rep: IMGVR_UViG_3300021493_000027-3300021493-Ga0190306_10008441__D67-151