←Back to structures
IMGVR_UViG_3300021488_000048-3300021488-Ga0190305_10014468
Arc-VirIMGVR_UViG_3300021488_000048-3300021488-Ga0190305_10014468
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-172
Domain cluster:
rep: ribonuclease_HII__YP_008052440__Phaeocystis_globosa_virus__251749__D18-172
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01351.26 best | RNase_HII | 62.3 | 8.50e-17 | 80.4% | 75.4% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2etjA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.92 | 70.0 | 6.39e-01 | 88.7% | 62.4% |
| 1ekeA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.89 | 70.0 | 7.04e-01 | 81.5% | 95.3% |
| 2d0bA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.89 | 73.0 | 6.59e-01 | 85.1% | 73.1% |
| 4py5A02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.87 | 70.0 | 6.59e-01 | 82.1% | 77.9% |
| 3p5jA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.87 | 70.0 | 6.70e-01 | 82.7% | 83.7% |
| 1i39A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.87 | 69.0 | 7.25e-01 | 81.5% | 94.8% |
| 3vn5A02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.78 | 65.0 | 6.25e-01 | 88.1% | 78.0% |
| 6oziB00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.66 | 55.0 | 4.76e-01 | 85.7% | 88.0% |
| 4nspA00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.66 | 54.0 | 4.77e-01 | 86.3% | 87.4% |
| 2w35A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.65 | 53.0 | 4.80e-01 | 85.7% | 85.7% |
| 1yvuA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.60 | 48.0 | 4.43e-01 | 84.5% | 93.5% |
| 2w42B02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.58 | 49.0 | 4.40e-01 | 89.3% | 90.5% |
| 2x5gA00 | 3.30.720.60 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.52 | 25.0 | 3.26e-01 | 94.6% | 80.2% |
| 4ktwA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 42.0 | 4.32e-01 | 86.3% | 91.3% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.94 | 82.0 | 7.10e-01 | 91.7% | 62.5% | |
| None | — | 0.94 | 82.0 | 7.24e-01 | 91.7% | 66.7% | |
| 4417609 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.94 | 82.0 | 7.09e-01 | 91.7% | 63.8% |
| 4175479 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.93 | 81.0 | 7.01e-01 | 91.1% | 63.4% |
| None | — | 0.93 | 74.0 | 6.96e-01 | 82.7% | 70.3% | |
| None | — | 0.92 | 73.0 | 7.09e-01 | 81.5% | 75.0% | |
| 4262002 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.92 | 82.0 | 6.84e-01 | 91.7% | 59.3% |
| 4993672 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.92 | 73.0 | 6.65e-01 | 81.5% | 74.8% |
| 4271759 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.91 | 81.0 | 7.22e-01 | 91.1% | 78.2% |
| 4176554 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.90 | 74.0 | 6.12e-01 | 85.1% | 66.9% |
| 3248200 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.90 | 73.0 | 6.40e-01 | 83.3% | 70.9% |
| 4956142 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.89 | 71.0 | 7.32e-01 | 81.5% | 95.0% |
| 4053614 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.89 | 72.0 | 6.32e-01 | 82.1% | 67.1% |
| 5004347 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.89 | 74.0 | 6.48e-01 | 85.7% | 75.5% |
| 3626299 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.89 | 71.0 | 5.81e-01 | 82.7% | 57.5% |
| 4297736 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.89 | 68.0 | 6.53e-01 | 82.7% | 70.8% |
| 3607891 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.88 | 78.0 | 6.68e-01 | 91.7% | 72.8% |
| 4165286 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.88 | 77.0 | 7.02e-01 | 90.5% | 71.9% |
| 4524222 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.88 | 73.0 | 6.32e-01 | 85.1% | 74.2% |
| 3838396 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.88 | 70.0 | 6.61e-01 | 81.5% | 72.8% |
| 4016925 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.88 | 70.0 | 5.68e-01 | 82.7% | 58.0% |
| 4398538 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.88 | 77.0 | 6.90e-01 | 90.5% | 75.0% |
| 4989427 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.88 | 70.0 | 6.49e-01 | 82.1% | 74.9% |
| None | — | 0.88 | 73.0 | 6.84e-01 | 85.1% | 73.8% | |
| 4998267 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.87 | 69.0 | 6.47e-01 | 81.5% | 80.0% |
| 5046769 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.86 | 75.0 | 6.85e-01 | 89.3% | 81.3% |
| 4995983 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.86 | 75.0 | 6.45e-01 | 90.5% | 69.8% |
| 4332144 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.85 | 75.0 | 6.68e-01 | 91.7% | 74.2% |
| 1837475 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.85 | 72.0 | 6.70e-01 | 87.5% | 78.5% |
| 4243829 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.84 | 76.0 | 6.86e-01 | 94.0% | 76.8% |
| 4682851 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.82 | 73.0 | 6.60e-01 | 93.5% | 75.9% |
| 5043207 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.81 | 67.0 | 6.00e-01 | 85.7% | 71.6% |
| 4223327 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.80 | 77.0 | 6.73e-01 | 100.0% | 73.8% |
| 5028451 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.80 | 65.0 | 6.75e-01 | 88.7% | 91.0% |
| 4965255 | 2484.1.1.264 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF3800 | 0.79 | 64.0 | 5.73e-01 | 84.5% | 92.2% |
| 3837099 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.66 | 55.0 | 4.69e-01 | 86.3% | 85.5% |
| 2526821 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.66 | 54.0 | 4.70e-01 | 85.7% | 86.9% |
| 3240591 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.65 | 53.0 | 4.61e-01 | 85.7% | 88.0% |
| 3259935 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.65 | 54.0 | 4.65e-01 | 86.9% | 85.7% |
| 3429580 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.63 | 46.0 | 4.72e-01 | 75.0% | 81.9% |
| 4270370 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.61 | 50.0 | 4.98e-01 | 84.5% | 88.8% |
| 5026406 | 2484.1.1.22 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 | 0.60 | 50.0 | 4.87e-01 | 85.7% | 100.0% |
| 3940074 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 46.0 | 5.06e-01 | 85.7% | 99.3% |
| 5053046 | 2484.1.1.22 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 | 0.58 | 47.0 | 4.54e-01 | 83.9% | 100.0% |
| 4604718 | 330.6.1.0 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain | 0.58 | 28.0 | 3.73e-01 | 73.8% | 85.6% |
| 3940439 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 46.0 | 3.56e-01 | 83.3% | 60.3% |
| 3672774 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.57 | 39.0 | 3.93e-01 | 88.1% | 67.6% |
| 3604480 | 2484.1.1.22 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 | 0.57 | 47.0 | 4.72e-01 | 86.9% | 100.0% |
| 3827180 | 2484.1.1.110 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE | 0.56 | 37.0 | 3.77e-01 | 73.2% | 66.7% |
| 5019749 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 45.0 | 4.73e-01 | 91.7% | 94.0% |
| 3571382 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.56 | 44.0 | 3.12e-01 | 82.7% | 77.7% |
| 3453547 | 2484.1.1.110 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE | 0.56 | 44.0 | 3.71e-01 | 82.7% | 72.7% |
| 3177789 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 45.0 | 4.49e-01 | 85.1% | 84.1% |
| 3939197 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 43.0 | 3.37e-01 | 83.3% | 57.4% |
| 3643018 | 2484.1.1.110 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE | 0.53 | 42.0 | 3.75e-01 | 82.7% | 73.2% |
| 3232269 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 37.0 | 4.10e-01 | 87.5% | 91.5% |
| 3411385 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 41.0 | 4.04e-01 | 82.7% | 76.8% |
| 3927548 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 41.0 | 3.49e-01 | 82.7% | 58.9% |
| 3599665 | 11.1.1.45 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 | 0.52 | 29.0 | 3.35e-01 | 88.1% | 75.7% |
| 3481174 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 40.0 | 3.40e-01 | 82.7% | 63.9% |