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IMGVR_UViG_3300021491_000005-3300021491-Ga0190332_100001522

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300021491_000005-3300021491-Ga0190332_100001522 ↗
Kingdom:: archaea

Quality

70.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-36

PDB

Domain cluster: representative

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3c1dB01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.80	55.0	4.43e-01	71.9%	38.7%
3ic3A01	3.30.2370.10	Alpha Beta › 2-Layer Sandwich › putative pyruvate dehydrogenase fold › putative pyruvate dehydrogenase	0.78	55.0	4.42e-01	75.0%	37.5%
7febA03	3.40.50.12790	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4	0.78	62.0	4.66e-01	100.0%	34.8%
1tbxB00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.78	56.0	4.03e-01	78.1%	48.9%
2xgvA00	1.10.375.10	Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein	0.71	58.0	3.78e-01	90.6%	91.7%
3lxuX03	6.10.250.3080	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.69	53.0	4.31e-01	100.0%	45.2%
2a90A02	3.30.720.50	Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 ›	0.68	48.0	3.93e-01	87.5%	39.3%
3r1wA00	2.160.10.10	Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins	0.63	53.0	3.30e-01	96.9%	19.4%
1ub4C00	2.10.260.10	Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D ›	0.63	46.0	3.58e-01	78.1%	56.0%
7oslA02	3.40.50.12790	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4	0.63	52.0	3.84e-01	100.0%	32.0%
6sc4A00	2.160.10.10	Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins	0.62	57.0	3.43e-01	100.0%	22.0%
7f0uA01	1.10.8.1190	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain	0.57	46.0	3.23e-01	87.5%	37.9%
2dcfA03	1.20.58.710	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	47.0	3.29e-01	96.9%	65.4%
1mhmA00	3.60.90.10	Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase	0.54	43.0	2.57e-01	84.4%	43.5%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4987757	5054.1.1.6 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH	0.85	60.0	4.10e-01	75.0%	23.1%
5032364	7569.1.1.0 ↗	a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like	0.75	51.0	3.12e-01	71.9%	11.6%
3331594	304.9.1.0 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD	0.69	58.0	4.45e-01	100.0%	41.2%
5067548	1.1.3.0 ↗	beta barrels › cradle loop barrel › RIFT-related › AbrB	0.64	44.0	4.13e-01	78.1%	95.6%
3960493	1001.1.1.0 ↗	a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1	0.62	47.0	3.21e-01	75.0%	19.2%
4959387	1.1.3.2 ↗	beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin	0.58	41.0	3.85e-01	78.1%	93.3%
5047375	377.1.1.31 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS	0.57	41.0	3.52e-01	75.0%	87.3%