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IMGVR_UViG_3300021492_000027-3300021492-Ga0190336_100000222

Arc-Vir

IMGVR_UViG_3300021492_000027-3300021492-Ga0190336_100000222

Identity

Kingdom:
archaea

Quality

86.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-69
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2greF02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.64 45.0 4.31e-01 77.9% 64.1%
2k7iA01 3.30.160.160 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like 0.63 35.0 4.00e-01 92.6% 75.0%
1wdiA02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.63 40.0 3.93e-01 83.8% 60.3%
1q1uA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 45.0 3.64e-01 80.9% 95.7%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 41.0 4.17e-01 79.4% 71.2%
2wadA01 6.20.70.10 Special › Other non-globular › Ubiquitin Ligase Nedd4; Chain: W; › 0.60 28.0 3.65e-01 91.2% 93.3%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.59 42.0 4.07e-01 77.9% 67.6%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 43.0 3.93e-01 76.5% 79.8%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 37.0 4.33e-01 75.0% 91.8%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 3.66e-01 82.4% 68.1%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.57 42.0 3.33e-01 79.4% 72.6%
1jlxA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 42.0 3.43e-01 82.4% 98.6%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.26e-01 86.8% 90.8%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 3.52e-01 79.4% 56.2%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 3.83e-01 79.4% 87.5%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 4.09e-01 82.4% 83.8%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 27.0 2.63e-01 92.6% 41.0%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 33.0 2.97e-01 98.5% 44.3%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 41.0 3.23e-01 82.4% 45.7%
3fewX02 3.30.1310.40 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › 0.53 38.0 3.45e-01 76.5% 84.2%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.53 39.0 2.83e-01 79.4% 35.7%
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.53 39.0 3.15e-01 80.9% 90.1%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.53 39.0 2.75e-01 80.9% 99.2%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 34.0 3.26e-01 82.4% 55.7%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.52 35.0 3.64e-01 77.9% 77.0%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 39.0 3.44e-01 80.9% 58.7%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 37.0 2.42e-01 79.4% 98.5%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 37.0 3.21e-01 79.4% 50.5%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.50 36.0 2.85e-01 79.4% 35.9%
4le7A01 2.90.10.30 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › 0.50 35.0 2.76e-01 77.9% 44.8%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4188237 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.71 38.0 4.22e-01 92.6% 65.5%
5075465 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.67 38.0 4.03e-01 92.6% 63.3%
5076995 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.67 45.0 4.30e-01 80.9% 60.0%
4297945 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.66 37.0 4.02e-01 92.6% 65.5%
3284714 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.66 37.0 3.83e-01 92.6% 57.1%
4083044 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.66 44.0 4.28e-01 79.4% 62.7%
4243634 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.66 37.0 3.57e-01 92.6% 48.0%
3974688 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.65 35.0 4.00e-01 91.2% 70.0%
3972951 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.62 43.0 4.15e-01 79.4% 65.3%
7726 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.61 34.0 3.61e-01 92.6% 60.3%
4345436 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.60 34.0 3.33e-01 92.6% 48.0%
5026698 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.57 46.0 3.54e-01 95.6% 37.8%
4012062 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.55 40.0 3.16e-01 82.4% 89.7%
5040153 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 38.0 3.73e-01 75.0% 86.7%
3847696 3787.3.1.1 ↗ alpha bundles › HAD superfamily helical bundle insertion domain › Insertion domain in cytosolic IMP-GMP specific 5'-nucleotidase › Insertion domain in cytosolic IMP-GMP specific 5'-nucleotidase › 5_nucleotid 0.54 45.0 3.55e-01 98.5% 43.0%
5047427 75.1.1.4 ↗ beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Cyclophil_like 0.54 39.0 3.25e-01 76.5% 99.2%
4978694 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.54 40.0 3.24e-01 80.9% 97.0%
3574803 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.54 47.0 3.11e-01 100.0% 75.9%
185247 245.3.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Colicin S4 receptor-binding domain › Colicin S4 receptor-binding domain 0.53 38.0 3.53e-01 76.5% 89.9%
4103373 375.1.1.47 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.51 37.0 3.96e-01 79.4% 98.2%
4302456 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.50 36.0 3.41e-01 79.4% 93.3%
3904085 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 31.0 3.13e-01 79.4% 60.0%