←Back to structures

IMGVR_UViG_3300021492_000027-3300021492-Ga0190336_100000243

Arc-Vir

IMGVR_UViG_3300021492_000027-3300021492-Ga0190336_100000243

Identity

Kingdom:
archaea

Quality

85.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-84
PDB
Domain cluster: rep: OP880252__WAE39480.1__LDLAKGPJ-00056__00056__D4-71
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.63 53.0 4.42e-01 92.5% 88.3%
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.62 48.0 4.34e-01 83.7% 60.6%
3vv1A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 50.0 4.11e-01 91.3% 68.8%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.59 35.0 4.06e-01 72.5% 84.2%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 49.0 4.02e-01 91.3% 69.6%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 40.0 3.43e-01 77.5% 43.5%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 42.0 3.60e-01 87.5% 48.1%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 3.96e-01 88.7% 79.8%
2erfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 42.0 3.14e-01 80.0% 62.7%
1wi5A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 31.0 3.18e-01 76.2% 53.3%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.56 44.0 3.40e-01 85.0% 79.1%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 50.0 3.29e-01 98.8% 40.8%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 4.29e-01 96.2% 93.7%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.55 34.0 3.85e-01 76.2% 86.0%
4m0hA01 2.60.120.1440 Mainly Beta › Sandwich › Jelly Rolls › 0.55 39.0 3.23e-01 88.7% 42.4%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 37.0 4.16e-01 73.8% 98.2%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 37.0 3.82e-01 75.0% 75.3%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 50.0 3.29e-01 100.0% 36.8%
1qxmA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 40.0 3.31e-01 77.5% 98.6%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 48.0 3.29e-01 100.0% 39.2%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.84e-01 88.7% 75.8%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 38.0 3.97e-01 73.8% 94.6%
2p6rA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 42.0 3.21e-01 90.0% 34.7%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 48.0 3.16e-01 100.0% 39.8%
2g8sB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 46.0 3.10e-01 100.0% 53.0%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 37.0 3.62e-01 73.8% 68.1%
3cgbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 45.0 3.58e-01 95.0% 94.0%
3b5qA00 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.53 37.0 2.31e-01 87.5% 12.3%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 47.0 3.13e-01 98.8% 37.5%
3ww7A00 2.40.10.500 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 39.0 3.89e-01 88.7% 75.6%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 47.0 3.11e-01 100.0% 34.3%
3iwaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 45.0 3.67e-01 97.5% 95.5%
1rwiA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 47.0 3.31e-01 100.0% 43.4%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 36.0 3.19e-01 73.8% 70.6%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.51 42.0 3.35e-01 88.7% 85.2%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 35.0 3.56e-01 71.2% 84.0%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 33.0 3.85e-01 72.5% 100.0%
1ob8A00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.51 35.0 3.17e-01 72.5% 97.5%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 36.0 3.28e-01 76.2% 56.0%
5hkeA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.51 41.0 2.81e-01 91.3% 59.3%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 35.0 3.60e-01 72.5% 88.0%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025894 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 37.0 3.31e-01 93.8% 41.3%
3331569 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.62 41.0 4.85e-01 71.2% 98.2%
3519451 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.62 52.0 4.28e-01 91.3% 66.9%
3509392 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.62 52.0 4.14e-01 91.3% 60.6%
4146735 219.1.1.159 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6005 0.61 44.0 3.48e-01 77.5% 45.9%
4589583 2008.1.1.191 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_HpaII 0.60 53.0 4.12e-01 98.8% 71.7%
3211396 5.1.4.167 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR19_1st 0.59 53.0 3.46e-01 100.0% 45.7%
4020821 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 42.0 2.70e-01 78.8% 14.5%
2665702 3146.1.1.3 ↗ a+b complex topology › gH main domain › gH main domain › gH main domain › Phage_glycop_gL 0.59 42.0 3.79e-01 76.2% 58.3%
3516909 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 51.0 3.92e-01 95.0% 84.0%
3910607 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 42.0 4.68e-01 76.2% 98.4%
4317320 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.58 41.0 3.80e-01 72.5% 79.6%
3609378 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 45.0 4.31e-01 88.7% 94.7%
3230083 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 38.0 3.72e-01 75.0% 62.2%
4269256 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.57 37.0 4.16e-01 70.0% 90.0%
3395948 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.56 36.0 4.22e-01 72.5% 96.4%
3246038 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.56 47.0 3.93e-01 95.0% 68.2%
4957895 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.56 51.0 3.35e-01 100.0% 37.5%
4940485 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 43.0 3.83e-01 86.3% 88.0%
3924523 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.56 46.0 3.41e-01 91.3% 57.1%
3914746 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.55 41.0 4.31e-01 100.0% 91.4%
3875218 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.55 40.0 4.31e-01 100.0% 96.9%
3621392 5.1.3.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b 0.55 50.0 3.40e-01 100.0% 42.9%
3755410 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.55 50.0 3.08e-01 100.0% 35.7%
4000862 220.1.1.9 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.55 43.0 3.67e-01 86.3% 80.0%
3849084 5.1.11.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.55 49.0 3.07e-01 100.0% 27.7%
3460976 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.54 47.0 3.06e-01 93.8% 25.4%
4003604 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 42.0 3.93e-01 86.3% 94.3%
4193132 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.54 38.0 3.53e-01 72.5% 84.0%
3581143 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.54 39.0 4.28e-01 100.0% 96.9%
4934826 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 48.0 3.25e-01 100.0% 49.2%
3714545 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 47.0 3.08e-01 100.0% 34.0%
3514432 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 43.0 3.47e-01 91.3% 66.7%
3931993 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 36.0 4.04e-01 71.2% 95.0%
3348336 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.52 42.0 2.90e-01 88.7% 89.8%
3646226 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.52 38.0 3.82e-01 83.7% 75.0%
3831707 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.52 46.0 3.04e-01 100.0% 44.5%
3990350 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.52 46.0 3.09e-01 100.0% 52.1%
3453961 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 46.0 3.00e-01 97.5% 42.6%
3268906 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.52 38.0 3.67e-01 92.5% 69.7%
3598462 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 40.0 3.57e-01 88.7% 82.4%
3675857 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 40.0 3.06e-01 85.0% 41.6%