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IMGVR_UViG_3300021493_000001-3300021493-Ga0190306_100001822

Arc-Vir

IMGVR_UViG_3300021493_000001-3300021493-Ga0190306_100001822

Identity

Kingdom:
archaea

Quality

96.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-101_152-166
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 35.0 3.35e-01 97.4% 50.0%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 30.0 3.01e-01 100.0% 48.2%
2bjoA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.55 39.0 4.26e-01 85.2% 91.5%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 45.0 4.05e-01 91.3% 96.4%
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 18.0 2.81e-01 100.0% 74.4%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 31.0 3.00e-01 90.4% 47.4%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.53 35.0 2.76e-01 99.1% 30.9%
3aj3A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 43.0 3.28e-01 87.0% 96.7%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.52 44.0 4.20e-01 93.0% 77.2%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 33.0 3.66e-01 80.9% 80.2%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.52 40.0 4.02e-01 81.7% 90.6%
3f7xA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 31.0 2.97e-01 90.4% 49.6%
4fumA01 2.20.230.10 Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. 0.50 31.0 3.63e-01 76.5% 93.2%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.50 35.0 3.42e-01 93.0% 64.6%
3bghB01 3.30.160.180 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Putative neuraminyllactose-binding hemagglutinin homolog like domain 0.50 45.0 3.95e-01 99.1% 80.1%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3611917 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.64 46.0 4.03e-01 85.2% 50.9%
3725561 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 38.0 3.07e-01 99.1% 30.8%
4016816 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 41.0 4.70e-01 97.4% 95.3%
3588488 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 38.0 4.10e-01 85.2% 77.9%
3173251 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.59 45.0 3.90e-01 97.4% 53.5%
3967083 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.57 36.0 3.88e-01 91.3% 74.7%
3733818 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.57 35.0 2.67e-01 87.0% 25.5%
3710521 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.57 44.0 4.00e-01 85.2% 61.3%
3969015 7503.1.1.8 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › DUF4136 0.56 41.0 3.88e-01 77.4% 76.4%
4542150 243.1.1.44 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MBA1 0.55 35.0 2.95e-01 98.3% 36.1%
3764790 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 34.0 3.61e-01 93.9% 72.6%
2324080 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.54 46.0 3.31e-01 93.0% 59.1%
5060622 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 37.0 3.84e-01 70.4% 78.1%
3788285 395.1.1.4 ↗ few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › Flocculin_t3 0.53 26.0 3.48e-01 75.7% 100.0%
3817498 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.53 47.0 4.25e-01 99.1% 80.6%
4946616 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.53 33.0 3.66e-01 100.0% 80.0%
4944561 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.52 33.0 3.57e-01 80.0% 75.0%
5073695 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.51 34.0 3.62e-01 80.0% 78.0%
3773175 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.50 40.0 3.43e-01 87.8% 53.0%
D2 medium residues 106-144
PDB
Domain cluster: representative