Back to structures

IMGVR_UViG_3300021493_000001-3300021493-Ga0190306_100001887

Arc-Vir

IMGVR_UViG_3300021493_000001-3300021493-Ga0190306_100001887

Quality

80.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-46
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4k3bA04 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.75 59.0 4.95e-01 88.6% 60.3%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.72 50.0 3.02e-01 72.7% 53.8%
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.72 53.0 4.49e-01 86.4% 56.1%
3og5A01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.67 52.0 4.31e-01 90.9% 92.9%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.66 45.0 3.80e-01 70.5% 48.6%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.66 55.0 3.92e-01 100.0% 66.0%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.64 51.0 4.08e-01 95.5% 42.1%
1sqhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 45.0 3.05e-01 75.0% 84.3%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.64 52.0 3.74e-01 100.0% 69.0%
1jqgA02 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.63 54.0 3.30e-01 100.0% 22.7%
4dkkA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 45.0 3.90e-01 79.5% 58.1%
4l8nA03 3.30.160.670 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 48.0 3.44e-01 95.5% 64.0%
3ga7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 53.0 3.19e-01 95.5% 61.0%
3venA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 45.0 2.88e-01 81.8% 25.4%
4dmzA02 3.30.70.2880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 43.0 3.13e-01 77.3% 38.7%
2xssA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.61 43.0 3.10e-01 79.5% 23.1%
4exoA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 50.0 3.46e-01 93.2% 42.5%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.60 48.0 3.88e-01 88.6% 82.1%
3qh4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 50.0 3.07e-01 97.7% 58.6%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.60 49.0 4.03e-01 97.7% 65.6%
2ltsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 40.0 3.34e-01 70.5% 48.8%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.59 49.0 3.90e-01 100.0% 81.8%
5uayA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.59 44.0 3.83e-01 90.9% 90.2%
4gs5A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.59 46.0 3.73e-01 95.5% 67.6%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 48.0 3.27e-01 100.0% 57.4%
6vq6H01 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 51.0 3.30e-01 100.0% 30.4%
1ob8A00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.59 49.0 3.71e-01 100.0% 87.4%
2zyzB02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.58 47.0 3.82e-01 95.5% 44.2%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 49.0 3.36e-01 100.0% 77.8%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.58 49.0 3.31e-01 100.0% 93.9%
5tuuA00 1.20.140.80 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Transcription factor DP 0.57 43.0 3.01e-01 81.8% 54.9%
6eudA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 44.0 3.16e-01 97.7% 75.3%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.57 43.0 3.37e-01 86.4% 41.3%
6rzqA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.57 48.0 3.95e-01 97.7% 76.5%
2mcfA00 3.40.50.11630 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 47.0 3.39e-01 97.7% 70.3%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 39.0 3.37e-01 75.0% 68.9%
3li9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 47.0 3.49e-01 100.0% 44.4%
2l66A00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.56 38.0 3.63e-01 72.7% 69.8%
3hnoA01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 47.0 3.08e-01 100.0% 37.1%
7kznP01 3.30.740.10 Alpha Beta › 2-Layer Sandwich › Protein Inhibitor Of Neuronal Nitric Oxide Synthase › Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 0.54 42.0 3.42e-01 100.0% 43.0%
3hrgA01 3.30.420.250 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, N-terminal domain 0.53 41.0 3.04e-01 95.5% 39.9%
4wy5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 42.0 2.63e-01 100.0% 37.5%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 43.0 3.33e-01 97.7% 61.9%
3fvyA03 3.30.70.2600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 43.0 3.74e-01 88.6% 90.7%
3bs4A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 2.74e-01 100.0% 22.4%
2ei0A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 42.0 3.02e-01 97.7% 98.7%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.52 44.0 2.85e-01 100.0% 32.6%
6ll8A02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.52 39.0 3.10e-01 97.7% 61.7%
2c7yA00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 39.0 2.41e-01 97.7% 14.3%
1oi2A02 3.30.1180.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 0.51 38.0 2.81e-01 95.5% 69.1%
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 43.0 3.17e-01 100.0% 55.0%
1whnA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 38.0 3.19e-01 97.7% 43.6%
4f0qD01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.51 40.0 2.60e-01 95.5% 56.9%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 38.0 3.10e-01 90.9% 77.8%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3715600 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.71 46.0 2.60e-01 72.7% 6.0%
4189433 223.1.1.81 a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_WalK 0.70 55.0 3.60e-01 90.9% 48.5%
3494433 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 50.0 3.70e-01 81.8% 33.1%
4592207 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 56.0 3.98e-01 95.5% 69.0%
4899007 3121.1.1.0 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.68 48.0 4.21e-01 79.5% 61.1%
4898997 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.67 48.0 4.23e-01 81.8% 61.1%
5023832 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.66 52.0 4.45e-01 88.6% 56.0%
3289101 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.66 47.0 4.56e-01 77.3% 88.0%
5032518 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.65 56.0 4.34e-01 95.5% 68.4%
3933101 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 43.0 3.45e-01 70.5% 67.4%
3626173 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 50.0 2.99e-01 86.4% 16.9%
3260311 10.1.1.8 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.65 58.0 3.24e-01 100.0% 25.7%
1170594 885.1.1.1 a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › NusA_N 0.64 51.0 4.08e-01 95.5% 42.1%
3508353 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.63 46.0 2.90e-01 79.5% 23.2%
4348096 3675.1.1.1 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert 0.63 49.0 3.49e-01 95.5% 30.9%
4160593 3675.1.1.1 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert 0.63 49.0 3.45e-01 95.5% 30.9%
3586696 223.1.1.101 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30734 0.61 48.0 3.04e-01 93.2% 55.8%
3380640 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 49.0 3.18e-01 100.0% 22.8%
3666034 225.1.1.7 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.61 48.0 3.73e-01 90.9% 40.9%
3666939 2004.1.1.45 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MutS_V 0.61 47.0 2.59e-01 84.1% 14.4%
5046744 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 43.0 3.31e-01 75.0% 53.3%
4089697 304.36.1.1 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 0.61 49.0 4.01e-01 95.5% 86.7%
4647008 312.1.1.11 a+b three layers › HIT-like › HIT-related › HIT-related › Ap4A_phos_N 0.60 47.0 3.32e-01 93.2% 28.8%
3060306 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.59 42.0 3.44e-01 88.6% 46.3%
1548765 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.59 42.0 3.50e-01 88.6% 49.0%
5051542 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 44.0 2.89e-01 81.8% 25.3%
5037750 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.58 46.0 3.05e-01 88.6% 34.9%
3402774 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.58 44.0 3.78e-01 100.0% 48.2%
3648590 101.1.2.497 alpha arrays › HTH › HTH › winged helix domain › PF25874 0.57 47.0 3.90e-01 93.2% 87.5%
3929759 2007.1.1.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.57 45.0 3.00e-01 95.5% 20.0%
6661 4276.1.1.1 a+b two layers › XisI-like › XisI-like › XisI-like › XisI 0.57 43.0 3.37e-01 86.4% 41.3%
4009799 274.1.1.4 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.57 47.0 3.65e-01 95.5% 44.8%
3212521 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 48.0 2.92e-01 100.0% 62.7%
4996628 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 44.0 2.92e-01 90.9% 21.4%
None 0.56 47.0 2.99e-01 100.0% 98.4%
4949740 223.1.1.76 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_7 0.56 42.0 3.20e-01 84.1% 50.9%
3921321 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 46.0 2.80e-01 95.5% 89.8%
3986356 304.55.1.14 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp 0.56 39.0 2.44e-01 77.3% 48.2%
5023509 263.1.1.0 a+b three layers › SRF-like › SRF-like › SRF-like 0.55 38.0 3.79e-01 70.5% 71.1%
4411256 2004.1.1.80 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin 0.55 46.0 2.98e-01 100.0% 35.9%
3211833 4351.1.1.1 alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.55 41.0 2.67e-01 100.0% 16.3%
3061774 223.3.1.8 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.55 44.0 4.43e-01 93.2% 95.5%
1503101 2484.1.1.30 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Carbam_trans_N 0.54 45.0 2.91e-01 100.0% 28.2%
3882596 223.1.1.101 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30734 0.54 41.0 2.66e-01 95.5% 40.0%
4018584 6155.1.1.15 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF846 0.54 37.0 2.66e-01 75.0% 64.0%
3670739 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.53 45.0 3.09e-01 95.5% 48.1%
3486912 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 37.0 2.37e-01 75.0% 37.2%
4945537 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 45.0 3.22e-01 93.2% 50.0%
4231372 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.53 43.0 3.72e-01 90.9% 58.6%
3615178 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 44.0 2.97e-01 97.7% 98.9%
3721523 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.52 41.0 2.58e-01 100.0% 44.8%
5044501 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 41.0 3.32e-01 97.7% 50.0%
4989851 2007.1.5.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like 0.52 42.0 2.79e-01 95.5% 28.7%
3421312 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.51 43.0 3.78e-01 100.0% 70.0%
5076296 7573.1.1.1 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.51 41.0 2.82e-01 100.0% 55.4%
3531794 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.51 44.0 2.94e-01 100.0% 50.8%
3326674 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.50 36.0 3.50e-01 88.6% 90.9%