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IMGVR_UViG_3300021493_000008-3300021493-Ga0190306_10003217

Arc-Vir

IMGVR_UViG_3300021493_000008-3300021493-Ga0190306_10003217

Quality

84.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-76
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11985.14 best Phage_Mu_Gp27 30.4 6.80e-07 82.9% 35.3%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 50.0 4.93e-01 71.1% 63.4%
2mg4A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 48.0 5.14e-01 75.0% 83.3%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.66 47.0 4.65e-01 82.9% 70.4%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 5.15e-01 82.9% 100.0%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 57.0 4.59e-01 100.0% 98.0%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 45.0 4.46e-01 73.7% 74.4%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.64 46.0 3.31e-01 76.3% 60.6%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.64 49.0 4.07e-01 84.2% 49.3%
2wg7A00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.63 49.0 4.19e-01 84.2% 81.8%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.62 45.0 4.50e-01 78.9% 74.0%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 40.0 4.00e-01 71.1% 65.8%
1o82A00 1.20.225.10 Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 0.61 41.0 4.30e-01 71.1% 87.1%
3b81A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 52.0 3.97e-01 96.1% 96.7%
3cx3B01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.58 45.0 3.52e-01 82.9% 87.0%
1bedA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 42.0 3.25e-01 78.9% 39.2%
2p1aB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.57 46.0 3.71e-01 86.8% 61.6%
4dlqA02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 41.0 3.85e-01 81.6% 62.1%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 4.07e-01 90.8% 66.7%
3g0oA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.55 37.0 3.20e-01 71.1% 68.6%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.53 36.0 3.09e-01 71.1% 80.6%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929680 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 65.0 7.27e-01 85.5% 100.0%
5036279 4156.1.1.7 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › DUF5814 0.85 70.0 5.14e-01 86.8% 71.1%
4946654 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.84 57.0 6.41e-01 71.1% 88.3%
4927804 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.84 64.0 6.48e-01 84.2% 81.3%
4989419 4156.1.1.7 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › DUF5814 0.82 66.0 5.63e-01 84.2% 73.9%
3940641 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 56.0 6.01e-01 76.3% 84.6%
3941666 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.81 56.0 5.75e-01 75.0% 74.3%
3590474 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 60.0 5.79e-01 80.3% 70.6%
3966077 101.26.1.1 alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › Tex_N 0.79 57.0 6.00e-01 75.0% 85.7%
5044657 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 52.0 5.76e-01 73.7% 86.7%
5080146 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.73 54.0 4.90e-01 77.6% 81.0%
4236554 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.73 50.0 5.55e-01 71.1% 91.7%
4978129 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.72 57.0 3.55e-01 85.5% 58.5%
3602462 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.72 49.0 4.36e-01 71.1% 50.5%
3984964 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.71 48.0 4.91e-01 71.1% 74.7%
3986645 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 49.0 5.21e-01 71.1% 92.3%
3279756 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.65 52.0 4.24e-01 86.8% 79.3%
4336911 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 47.0 4.93e-01 80.3% 84.3%
3877252 101.1.2.306 alpha arrays › HTH › HTH › winged helix domain › NPR2 0.64 46.0 4.55e-01 75.0% 71.2%
3579249 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 51.0 4.99e-01 88.2% 98.8%
3341091 101.35.1.6 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › A_thal_3526 0.64 44.0 4.69e-01 72.4% 84.6%
3340005 101.1.2.472 alpha arrays › HTH › HTH › winged helix domain › A_thal_3526 0.64 52.0 5.00e-01 88.2% 84.1%
3411170 101.1.2.306 alpha arrays › HTH › HTH › winged helix domain › NPR2 0.63 44.0 4.51e-01 73.7% 77.3%
3815745 592.6.1.1 alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.61 44.0 4.35e-01 76.3% 83.7%
3439843 101.1.1.270 alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 0.60 48.0 4.66e-01 85.5% 84.7%
3250611 101.1.2.306 alpha arrays › HTH › HTH › winged helix domain › NPR2 0.59 41.0 4.12e-01 72.4% 81.3%
3769569 1091.1.1.0 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.59 43.0 4.59e-01 80.3% 98.5%
3331610 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.52 41.0 2.93e-01 89.5% 60.4%
D2 medium residues 77-172
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.89 69.0 4.96e-01 82.3% 32.5%
4wpcA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.85 69.0 4.81e-01 85.4% 44.2%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.85 66.0 4.80e-01 83.3% 33.1%
1qvrC04 6.10.140.130 Special › Helix non-globular › Helix Hairpins › 0.84 64.0 6.03e-01 82.3% 67.3%
4mh6A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.82 65.0 5.41e-01 83.3% 69.8%
6iknD01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.82 61.0 4.31e-01 86.5% 27.7%
3qa8A04 1.20.1270.250 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.82 61.0 4.49e-01 83.3% 32.2%
2pmsC00 6.10.140.920 Special › Helix non-globular › Helix Hairpins › 0.81 58.0 5.52e-01 80.2% 65.1%
3cazB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.81 64.0 4.89e-01 84.4% 39.0%
1x04A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.80 63.0 4.85e-01 82.3% 57.0%
3dytA02 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.78 62.0 4.86e-01 84.4% 42.1%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.78 61.0 5.09e-01 82.3% 70.8%
3ok8A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.78 61.0 4.58e-01 82.3% 36.1%
3k29A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.77 62.0 5.19e-01 85.4% 52.2%
1avoB00 1.20.120.180 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain 0.77 56.0 4.85e-01 76.0% 51.4%
4flaC00 6.10.250.2560 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.76 61.0 5.54e-01 86.5% 81.9%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 49.0 5.49e-01 70.8% 86.5%
7p3rA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.75 64.0 4.37e-01 92.7% 65.8%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 52.0 4.81e-01 78.1% 57.5%
3g67A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.74 58.0 4.42e-01 82.3% 39.9%
1jadA00 1.20.1230.10 Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain 0.73 57.0 4.22e-01 83.3% 90.5%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.72 53.0 4.28e-01 78.1% 53.0%
3pe0A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 45.0 4.46e-01 70.8% 60.4%
3nrxA00 1.20.58.1520 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 53.0 4.89e-01 79.2% 78.9%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 43.0 4.28e-01 75.0% 57.8%
1ykeD00 6.10.280.10 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator complex, subunit Med21 0.68 53.0 4.97e-01 81.2% 68.1%
2j1dG01 1.20.58.2220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain 0.67 54.0 3.56e-01 85.4% 45.0%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.65 53.0 5.37e-01 94.8% 87.4%
1w9rA00 1.20.58.440 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › choline binding protein A 0.65 49.0 4.61e-01 97.9% 65.5%
1gqeA01 1.20.58.410 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor 0.61 42.0 4.05e-01 71.9% 65.5%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3711300 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.90 62.0 5.15e-01 75.0% 43.9%
3599499 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.88 69.0 5.80e-01 81.2% 76.0%
3706526 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.87 70.0 5.88e-01 83.3% 53.3%
3711734 3755.3.1.297 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9 0.87 69.0 5.65e-01 83.3% 53.3%
3240634 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.87 67.0 5.57e-01 83.3% 49.7%
3634960 603.1.1.5 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N 0.86 61.0 5.84e-01 79.2% 64.5%
3598431 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.85 70.0 5.68e-01 85.4% 49.7%
5042955 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.83 68.0 4.07e-01 85.4% 14.0%
4563128 4992.1.1.29 extended segments › RelB-like › RelB-like › RelB-like › DUF5373 0.83 57.0 4.91e-01 70.8% 47.9%
3942242 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.81 64.0 5.56e-01 82.3% 59.3%
3608194 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.81 64.0 4.92e-01 84.4% 53.4%
3908132 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.80 65.0 4.65e-01 86.5% 32.3%
3703485 4177.1.1.34 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Flagellar_rod 0.78 68.0 4.64e-01 93.8% 34.7%
4043561 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.78 56.0 5.34e-01 87.5% 64.5%
3743496 4177.1.1.8 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.78 61.0 4.52e-01 82.3% 34.8%
3493924 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.78 59.0 4.22e-01 82.3% 28.5%
3607135 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.78 60.0 5.35e-01 82.3% 74.8%
3699787 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.75 58.0 4.32e-01 82.3% 84.6%
3793286 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.75 59.0 4.65e-01 84.4% 44.0%
3474685 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.74 53.0 4.97e-01 75.0% 61.7%
4197529 4992.1.1.23 extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N 0.73 51.0 4.94e-01 84.4% 63.6%
3743463 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.73 56.0 4.31e-01 83.3% 37.7%
3800491 4177.1.1.10 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › GMIP-like_FCH 0.73 58.0 4.29e-01 86.5% 39.2%
3832686 5069.1.1.7 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 0.72 55.0 4.32e-01 80.2% 82.6%
3818052 5069.1.1.7 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 0.72 55.0 4.35e-01 79.2% 84.9%
4975841 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.72 54.0 5.28e-01 88.5% 72.1%
3621403 4163.1.1.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.72 53.0 4.53e-01 77.1% 75.3%
3913300 3755.3.1.303 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A_4th 0.71 56.0 4.81e-01 84.4% 60.0%
3358852 3755.4.1.62 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PF31016 0.69 54.0 4.59e-01 83.3% 55.5%
4176312 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.66 45.0 4.53e-01 71.9% 68.0%
3988700 5082.1.1.1 alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.53 45.0 3.59e-01 92.7% 79.5%