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IMGVR_UViG_3300021495_000001-3300021495-Ga0190352_100000338

Arc-Vir

IMGVR_UViG_3300021495_000001-3300021495-Ga0190352_100000338

Identity

Kingdom:
archaea

Quality

90.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-74
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b7fA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.71 52.0 3.28e-01 77.8% 98.1%
4csbA00 2.40.128.480 Mainly Beta › Beta Barrel › Lipocalin › Rhodococcus equi virulence-associated protein 0.69 42.0 3.62e-01 79.2% 38.1%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.63 45.0 3.64e-01 77.8% 49.7%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 44.0 3.53e-01 76.4% 95.7%
3s8zA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.60 44.0 2.88e-01 77.8% 80.4%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 51.0 3.20e-01 100.0% 89.9%
1npeA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 50.0 3.44e-01 100.0% 99.6%
2hoeA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 41.0 3.26e-01 76.4% 90.1%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 3.18e-01 100.0% 98.5%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 49.0 4.11e-01 100.0% 62.1%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 49.0 3.36e-01 100.0% 37.0%
3fewX02 3.30.1310.40 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › 0.55 39.0 3.57e-01 75.0% 84.2%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 49.0 3.32e-01 100.0% 39.0%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 2.89e-01 97.2% 18.9%
3c18A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 35.0 3.00e-01 94.4% 40.0%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 46.0 2.96e-01 95.8% 21.6%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 47.0 3.93e-01 100.0% 74.6%
2itmA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 47.0 3.25e-01 100.0% 94.2%
4bc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 47.0 3.07e-01 100.0% 83.9%
2w18A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 46.0 3.06e-01 100.0% 57.2%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 45.0 3.87e-01 100.0% 71.4%
2w40A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 46.0 3.18e-01 100.0% 93.3%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 45.0 3.79e-01 100.0% 62.5%
3t69A01 3.30.420.300 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, substrate binding domain 0.51 39.0 3.87e-01 100.0% 78.7%
1qs1A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.51 36.0 2.69e-01 75.0% 84.8%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 44.0 3.29e-01 100.0% 43.7%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.51 40.0 3.14e-01 100.0% 37.4%
3tqfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 2.95e-01 100.0% 35.8%
2zgoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 45.0 3.42e-01 100.0% 46.7%
6p2kB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 43.0 2.76e-01 98.6% 27.2%
3vglA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 44.0 3.60e-01 100.0% 98.6%
2a5zA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 40.0 2.83e-01 100.0% 26.8%
4htlA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 44.0 3.96e-01 100.0% 97.0%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 43.0 3.70e-01 100.0% 76.6%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3969424 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 50.0 3.16e-01 75.0% 99.5%
3286200 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.68 50.0 3.19e-01 77.8% 96.6%
3892345 5.1.4.254 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.63 50.0 3.07e-01 95.8% 14.3%
5079230 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.63 40.0 3.48e-01 97.2% 43.8%
3520708 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 49.0 3.11e-01 97.2% 17.3%
3580069 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 49.0 3.14e-01 88.9% 19.7%
1148120 2484.1.1.46 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DGOK 0.59 41.0 3.41e-01 72.2% 93.1%
4532819 2484.1.1.287 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RsgI_M 0.59 50.0 3.77e-01 93.1% 91.8%
3484711 5.1.4.242 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.58 48.0 3.04e-01 97.2% 17.6%
4495021 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.58 47.0 3.02e-01 88.9% 85.9%
2394538 2.1.1.101 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › KfrB 0.57 48.0 4.14e-01 94.4% 79.1%
3579989 5.1.4.116 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 0.56 49.0 3.08e-01 95.8% 24.2%
3405436 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 3.96e-01 90.3% 80.9%
3505139 5.1.12.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.56 38.0 2.62e-01 72.2% 19.0%
5063667 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 37.0 3.37e-01 70.8% 88.6%
185247 245.3.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Colicin S4 receptor-binding domain › Colicin S4 receptor-binding domain 0.55 39.0 3.66e-01 75.0% 89.9%
3789432 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 2.84e-01 95.8% 23.6%
3720832 5.1.3.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.55 49.0 3.21e-01 100.0% 36.8%
4326749 2484.1.1.175 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N+FGGY_C 0.54 49.0 2.90e-01 100.0% 47.6%
3410153 5.1.3.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b 0.54 48.0 3.27e-01 100.0% 95.6%
3798152 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 49.0 3.27e-01 100.0% 92.4%
3503503 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.54 48.0 3.84e-01 100.0% 75.2%
4995027 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.54 48.0 4.01e-01 100.0% 69.6%
4951151 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.53 47.0 3.02e-01 100.0% 81.7%
5074297 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.53 48.0 3.29e-01 100.0% 94.7%
3577733 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.53 48.0 3.02e-01 100.0% 69.3%
4172290 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.53 47.0 3.87e-01 100.0% 72.3%
4963443 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.53 44.0 4.06e-01 94.4% 70.5%
3582409 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.52 44.0 3.40e-01 93.1% 66.9%
5077181 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.52 47.0 3.29e-01 100.0% 93.5%
3943293 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.52 46.0 3.20e-01 100.0% 93.2%
4681452 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.52 45.0 2.90e-01 98.6% 33.7%
3290386 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.52 46.0 3.60e-01 100.0% 85.2%
3917937 220.1.1.173 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERK 0.51 46.0 3.95e-01 100.0% 72.2%
3286202 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.51 46.0 3.75e-01 100.0% 75.4%
4112241 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.50 40.0 3.88e-01 91.7% 85.9%
4954974 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.50 44.0 3.08e-01 97.2% 93.9%
4987602 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.50 44.0 3.70e-01 100.0% 73.6%
3602008 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 39.0 2.29e-01 90.3% 9.7%
1822927 227.1.1.2 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.50 44.0 3.42e-01 100.0% 57.7%
5062242 2484.1.1.21 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.50 45.0 3.38e-01 100.0% 80.0%